View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20401_low_4 (Length: 347)
Name: NF20401_low_4
Description: NF20401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20401_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 72 - 330
Target Start/End: Complemental strand, 20339972 - 20339724
Alignment:
| Q |
72 |
tccgctcacaacatatagaatcaaacagtaacaaaagcctaataacaaaccatcaacagggaatatctaaaagagagaaagagtaacaatatcaaaagac |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| |
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| T |
20339972 |
tccgctcacaacatatagaatcaaacagtaacaaaagcctaataacaaaccatcaacagggaatatctaa----------gaataaaaatatcaaaagac |
20339883 |
T |
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| Q |
172 |
acaacaaaaactccaccaccagcttgagacataactgcagcagacggaagctcacaccgatgcgaaccaaagtcacggaagctcacacccgacactacct |
271 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
20339882 |
acaacaaaaacttcaccaccagcttgctacataactgcagcagacggaagctcacaccgatgcgaaccaaagtaacggaagctcacacccgacgctacct |
20339783 |
T |
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| Q |
272 |
agaagctgaccaacgttgaagtgtgctgcaacaaccttcaaccatgctgccctcaatac |
330 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| |
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| T |
20339782 |
agaagctgaccaacgttgaactgggctgcaacaaccttcaaccgtgctgccctcaatac |
20339724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 15963190 - 15963143
Alignment:
| Q |
275 |
agctgaccaacgttgaagtgtgctgcaacaaccttcaaccatgctgcc |
322 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15963190 |
agctgatcaacgttgaagtgtgctgcaacaactttcaaccatgctgcc |
15963143 |
T |
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