View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20401_low_5 (Length: 252)
Name: NF20401_low_5
Description: NF20401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20401_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 11729483 - 11729291
Alignment:
| Q |
19 |
ctaccttcaaacagtctatgtcatgagataacaaaatcatatcaaagagttagttgaatcagatgctactgaaaatttatttgcaaaagaatgaacacat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729483 |
ctaccttcaaacagtctatgtcatgagataacaaaatcatattaaagagtaaattgaatcagatgctactgaaaatttatttgcaaaagaatgaacacat |
11729384 |
T |
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| Q |
119 |
gtcactggatatcacacaaccatgattgagaaatagattagagagaacatacataccttctattagtttctttcctctggaccacataatttg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11729383 |
gtcactggatatcacacaaccatgattgagaaatagaatagagagaacatacataccttctattagtttctttcctttggaccacataatttg |
11729291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 23739795 - 23739603
Alignment:
| Q |
19 |
ctaccttcaaacagtctatgtcatgagataacaaaatcatatcaaagagttagttgaatcagatgctactgaaaatttatttgcaaaagaatgaacacat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23739795 |
ctaccttcaaacagtctatgtcatgagataacaaaatcatattaaagagtaaattgaatcagatgctactgaaaatttatttgcaaaagaatgaacacat |
23739696 |
T |
|
| Q |
119 |
gtcactggatatcacacaaccatgattgagaaatagattagagagaacatacataccttctattagtttctttcctctggaccacataatttg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23739695 |
gtcactggatatcacacaaccatgattgagaaatagaatagagagaacatacataccttctattagtttctttcctttggaccacataatttg |
23739603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 43043102 - 43043142
Alignment:
| Q |
169 |
acataccttctattagtttctttcctctggaccacataatt |
209 |
Q |
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||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
43043102 |
acatatcttctattagtttctttcctatggactacataatt |
43043142 |
T |
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