View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20401_low_6 (Length: 204)

Name: NF20401_low_6
Description: NF20401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20401_low_6
NF20401_low_6
[»] chr7 (7 HSPs)
chr7 (15-189)||(19358126-19358300)
chr7 (35-183)||(19350799-19350947)
chr7 (19-189)||(19779818-19779988)
chr7 (19-189)||(19887395-19887565)
chr7 (32-108)||(29881565-29881641)
chr7 (68-109)||(22524940-22524981)
chr7 (46-114)||(19645433-19645501)
[»] chr6 (1 HSPs)
chr6 (19-189)||(14749589-14749759)
[»] chr2 (3 HSPs)
chr2 (15-189)||(18913234-18913405)
chr2 (15-124)||(18908485-18908595)
chr2 (62-114)||(20699218-20699270)
[»] chr3 (2 HSPs)
chr3 (19-189)||(32578546-32578716)
chr3 (16-189)||(12734489-12734662)
[»] scaffold0464 (1 HSPs)
scaffold0464 (16-189)||(8277-8450)
[»] chr1 (4 HSPs)
chr1 (62-114)||(4014680-4014732)
chr1 (61-114)||(4016513-4016566)
chr1 (61-114)||(21855097-21855150)
chr1 (61-109)||(4571208-4571256)
[»] chr5 (4 HSPs)
chr5 (155-189)||(18964668-18964702)
chr5 (61-114)||(24330613-24330666)
chr5 (35-80)||(29642642-29642687)
chr5 (68-112)||(42298371-42298415)
[»] scaffold0128 (1 HSPs)
scaffold0128 (68-112)||(4397-4441)
[»] chr4 (1 HSPs)
chr4 (46-110)||(53775097-53775161)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 19358300 - 19358126
Alignment:
Q  15 cagagattataaaacacttaaaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttgg 114  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19358300 cagagattataaaaaactttaaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttgg 19358201  T
Q  115 tataaaaccaccatattctattgttgacagatgtagtatgctttactcttttatctctccaattatagagaattg 189  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19358200 tataaaaccaccatattttattgttgacagatgtagtatgctttactcttttatctctccaattatagagaattg 19358126  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 19350799 - 19350947
Alignment:
Q  35 aaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttggtataaaaccaccatattcta 134  Q
    |||||||||  ||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||   | | | |||||||||||||||||    
T  19350799 aaataaattcaaacaattaaatcattaaagagaaacttactttcaagaggttgaaactaagctttcaacataattcctagcaaaaaaccaccatattcta 19350898  T
Q  135 ttgttgacagatgtagtatgctttactcttttatctctccaattataga 183  Q
    |||||||||||| || |||||| ||||||||||||||||||||||||||    
T  19350899 ttgttgacagatttaatatgctctactcttttatctctccaattataga 19350947  T

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Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 19779988 - 19779818
Alignment:
Q  19 gattataaaacacttaaaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttggtata 118  Q
    |||||||||| |||| |||| ||||  |||| ||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||||||| |||||||     
T  19779988 gattataaaatacttcaaattaattcaaacagttaaatcattgaagagaaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatg 19779889  T
Q  119 aaaccaccatattctattgttgacagatgtagtatgctttactcttttatctctccaattatagagaattg 189  Q
    ||||||| |||||  |||||  ||||||||| | |||| |||  |||||||||||||||||||||||||||    
T  19779888 aaaccacaatatttcattgtcaacagatgtaatttgctctaccgttttatctctccaattatagagaattg 19779818  T

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Target: chr7; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 19887395 - 19887565
Alignment:
Q  19 gattataaaacacttaaaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttggtata 118  Q
    |||||||||||||||||||| ||||  |||||||||||||| ||| ||||||||||| |||| ||  |||||||||||||||||||||||| |||||||     
T  19887395 gattataaaacacttaaaattaattcaaacaattaaatcattgaatagaaacttactctcaaaagattgaaactaagctttcaacataatccttggtatg 19887494  T
Q  119 aaaccaccatattctattgttgacagatgtagtatgctttactcttttatctctccaattatagagaattg 189  Q
    ||||||| |||||  |||||  ||||||||| | |||| |||  ||||||||||||| ||||||| |||||    
T  19887495 aaaccacaatatttcattgtcaacagatgtaatttgctctaccgttttatctctccagttatagataattg 19887565  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 29881641 - 29881565
Alignment:
Q  32 ttaaaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataat 108  Q
    ||||||| ||||| ||||  |||||||| | |||| ||||||||||||| |   |||||||||||||||||||||||    
T  29881641 ttaaaattaatttaaacatgtaaatcatgggagaggaacttactttcaaaaaattgaaactaagctttcaacataat 29881565  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 22524940 - 22524981
Alignment:
Q  68 aacttactttcaagaggatgaaactaagctttcaacataatc 109  Q
    ||||||||||||||| | |||||| |||||||||||||||||    
T  22524940 aacttactttcaagaagttgaaaccaagctttcaacataatc 22524981  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 19645433 - 19645501
Alignment:
Q  46 aacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttgg 114  Q
    ||||| |||||||||  | |||||||||||||||| | | |||||| || |||||||||||||| ||||    
T  19645433 aacaagtaaatcataataaagaaacttactttcaacaagttgaaaccaaactttcaacataatccttgg 19645501  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 14749759 - 14749589
Alignment:
Q  19 gattataaaacacttaaaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttggtata 118  Q
    |||||||||||||||||||| ||||  || ||||||||||| |||||||||||||||||||||||  ||||| ||||||||||||| |||| ||||||||    
T  14749759 gattataaaacacttaaaattaattcaaaaaattaaatcattgaagagaaacttactttcaagagcttgaaattaagctttcaacaaaatccttggtata 14749660  T
Q  119 aaaccaccatattctattgttgacagatgtagtatgctttactcttttatctctccaattatagagaattg 189  Q
    ||||||| |||||  |||||   |||||||| | || |  || ||||||||| |||||||||||| |||||    
T  14749659 aaaccacaatatttcattgtcaccagatgtaatttgttcaacccttttatctatccaattatagataattg 14749589  T

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Target: chr2 (Bit Score: 73; Significance: 1e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 18913234 - 18913405
Alignment:
Q  15 cagagattataaaacacttaaaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttgg 114  Q
    |||||||||||||||||||| ||| || | ||||||||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||  ||||    
T  18913234 cagagattataaaacacttataattaagtagaacaattaaatcattgaagagaaacttactttcaagaggttgataccaagctttcaacataattcttgg 18913333  T
Q  115 tataaaaccaccatattctattgttgacagatgtagtatgctttactcttttatctctccaattatagagaattg 189  Q
    ||| ||||||| ||||  |||||||   || || | | ||||  ||| | |||||||||||||||||||||||||    
T  18913334 tatgaaaccacaatatgttattgtt---agttgcaatttgctcaactttattatctctccaattatagagaattg 18913405  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 18908485 - 18908595
Alignment:
Q  15 cagagattataaaacactt-aaaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttg 113  Q
    |||||||  |||||||||| ||||| |||| ||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||||| |||    
T  18908485 cagagatcttaaaacacttcaaaatcaattagaacaattaaatcatcgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatcattg 18908584  T
Q  114 gtataaaacca 124  Q
    |||| ||||||    
T  18908585 gtattaaacca 18908595  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 20699218 - 20699270
Alignment:
Q  62 aagagaaacttactttcaagaggatgaaactaagctttcaacataatctttgg 114  Q
    ||||| ||||||||||||| | | ||||||||| ||||||||||||| |||||    
T  20699218 aagaggaacttactttcaaaaagttgaaactaaactttcaacataatgtttgg 20699270  T

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Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 32578546 - 32578716
Alignment:
Q  19 gattataaaacacttaaaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttggtata 118  Q
    ||||||||||||||| |||| ||||  |||||||||||||| ||||||||||||||| |||| ||| ||||| |||||||||||||||| | |||||||     
T  32578546 gattataaaacacttgaaattaattcaaacaattaaatcattgaagagaaacttactctcaaaaggttgaaaataagctttcaacataagccttggtatg 32578645  T
Q  119 aaaccaccatattctattgttgacagatgtagtatgctttactcttttatctctccaattatagagaattg 189  Q
    ||||||| |||||  || ||  ||||||||| | ||||  || ||||||| |||||||| |||||||||||    
T  32578646 aaaccacaatatttcatcgtcaacagatgtaatttgctcaacccttttatttctccaatcatagagaattg 32578716  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 12734489 - 12734662
Alignment:
Q  16 agagattataaaacacttaaaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttggt 115  Q
    |||||||||||||| |||||||| |||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||    
T  12734489 agagattataaaacgcttaaaattaattagaactattaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatccctggt 12734588  T
Q  116 ataaaaccaccatattctattgttgacagatgtagtatgctttactcttttatctctccaattatagagaattg 189  Q
     | |||||||  ||||  |||||  | |||| || | || |  || |||||||||||||||||||||| |||||    
T  12734589 ttgaaaccacattattacattgtcaagagatttaatttggtcaacccttttatctctccaattatagataattg 12734662  T

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Target: scaffold0464 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 8450 - 8277
Alignment:
Q  16 agagattataaaacacttaaaataaatttgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttggt 115  Q
    |||||||||||||| |||||||| |||| |||| ||||||| ||  ||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||    
T  8450 agagattataaaacgcttaaaattaattagaactattaaattattaaagagaaacttactttcaagaggttgaaactaagctttcaaaataatccctggt 8351  T
Q  116 ataaaaccaccatattctattgttgacagatgtagtatgctttactcttttatctctccaattatagagaattg 189  Q
     | |||||||  ||||  |||||  | |||| || | ||||  || |||||||||||||||||||||| |||||    
T  8350 ttgaaaccacattattacattgtcaagagatttaatttgctcaacccttttatctctccaattatagataattg 8277  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 4014680 - 4014732
Alignment:
Q  62 aagagaaacttactttcaagaggatgaaactaagctttcaacataatctttgg 114  Q
    ||||||||||||||||||| |   || ||||||||||||||||||||||||||    
T  4014680 aagagaaacttactttcaaaaaattggaactaagctttcaacataatctttgg 4014732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 4016513 - 4016566
Alignment:
Q  61 gaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttgg 114  Q
    |||||||||||||||||||| |   || |||||| |||||||||||||||||||    
T  4016513 gaagagaaacttactttcaaaaaattggaactaaactttcaacataatctttgg 4016566  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 21855097 - 21855150
Alignment:
Q  61 gaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttgg 114  Q
    |||||||||||||||||||| |   || ||||||||||||||||||||| ||||    
T  21855097 gaagagaaacttactttcaaaaacttggaactaagctttcaacataatcattgg 21855150  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 4571256 - 4571208
Alignment:
Q  61 gaagagaaacttactttcaagaggatgaaactaagctttcaacataatc 109  Q
    |||||||||||||||||||| |   || |||||||||||||||||||||    
T  4571256 gaagagaaacttactttcaaaaaattggaactaagctttcaacataatc 4571208  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 18964668 - 18964702
Alignment:
Q  155 ctttactcttttatctctccaattatagagaattg 189  Q
    ||||||||| |||||||||||||||||||||||||    
T  18964668 ctttactctattatctctccaattatagagaattg 18964702  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 24330613 - 24330666
Alignment:
Q  61 gaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttgg 114  Q
    |||||||||||||||||||| |   || ||||||||||||||||||||| ||||    
T  24330613 gaagagaaacttactttcaaaaacttggaactaagctttcaacataatcattgg 24330666  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 29642687 - 29642642
Alignment:
Q  35 aaataaatttgaacaattaaatcatagaagagaaacttactttcaa 80  Q
    |||||||||||||||| |||||||| | | ||||||||||||||||    
T  29642687 aaataaatttgaacaagtaaatcattgtaaagaaacttactttcaa 29642642  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 42298415 - 42298371
Alignment:
Q  68 aacttactttcaagaggatgaaactaagctttcaacataatcttt 112  Q
    ||||||||||||||| | |||||| |||||||| |||||||||||    
T  42298415 aacttactttcaagaagttgaaaccaagctttcgacataatcttt 42298371  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 4441 - 4397
Alignment:
Q  68 aacttactttcaagaggatgaaactaagctttcaacataatcttt 112  Q
    ||||||||||||||| | |||||| |||||||| |||||||||||    
T  4441 aacttactttcaagaagttgaaaccaagctttcgacataatcttt 4397  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 53775161 - 53775097
Alignment:
Q  46 aacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatct 110  Q
    ||||| |||||| | |||||| ||||||||||||| | | ||| || ||||||||||||||||||    
T  53775161 aacaagtaaatcttggaagaggaacttactttcaacacgttgataccaagctttcaacataatct 53775097  T

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