View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20402_high_10 (Length: 332)

Name: NF20402_high_10
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20402_high_10
NF20402_high_10
[»] chr4 (16 HSPs)
chr4 (9-231)||(42929559-42929768)
chr4 (231-312)||(10095405-10095485)
chr4 (231-294)||(39480651-39480714)
chr4 (230-314)||(6261997-6262080)
chr4 (231-294)||(14192702-14192764)
chr4 (231-278)||(14033729-14033775)
chr4 (231-278)||(36213396-36213443)
chr4 (231-294)||(49242563-49242625)
chr4 (231-294)||(51337307-51337369)
chr4 (231-292)||(28143836-28143896)
chr4 (231-275)||(38052595-38052638)
chr4 (230-292)||(29283371-29283432)
chr4 (231-292)||(7414127-7414188)
chr4 (231-292)||(7460208-7460269)
chr4 (233-294)||(17647959-17648019)
chr4 (230-278)||(56367285-56367332)
[»] chr7 (19 HSPs)
chr7 (231-312)||(18667012-18667093)
chr7 (230-312)||(4539511-4539592)
chr7 (231-312)||(13753759-13753840)
chr7 (231-294)||(8389697-8389760)
chr7 (231-294)||(43823964-43824027)
chr7 (231-307)||(31072913-31072988)
chr7 (230-294)||(48238115-48238178)
chr7 (231-278)||(15680122-15680168)
chr7 (231-294)||(35478373-35478436)
chr7 (231-294)||(48636360-48636422)
chr7 (234-292)||(20395185-20395243)
chr7 (231-292)||(8069234-8069294)
chr7 (231-280)||(44733170-44733219)
chr7 (230-278)||(12379302-12379349)
chr7 (231-294)||(19312326-19312388)
chr7 (231-276)||(45446446-45446491)
chr7 (231-278)||(135357-135403)
chr7 (228-278)||(37549188-37549237)
chr7 (246-278)||(6189798-6189830)
[»] chr8 (13 HSPs)
chr8 (231-312)||(3762339-3762420)
chr8 (231-312)||(1981234-1981314)
chr8 (229-314)||(7973359-7973444)
chr8 (231-301)||(45117137-45117208)
chr8 (231-312)||(40971089-40971170)
chr8 (231-298)||(16729378-16729445)
chr8 (231-312)||(31597165-31597244)
chr8 (231-281)||(7264041-7264091)
chr8 (231-308)||(6927907-6927983)
chr8 (229-294)||(3509845-3509909)
chr8 (232-313)||(39905874-39905954)
chr8 (231-294)||(4432468-4432531)
chr8 (231-294)||(11995097-11995159)
[»] chr6 (13 HSPs)
chr6 (232-313)||(18674997-18675078)
chr6 (229-297)||(20990098-20990166)
chr6 (231-292)||(1603013-1603074)
chr6 (231-292)||(22012514-22012575)
chr6 (230-306)||(21442392-21442468)
chr6 (231-294)||(34043181-34043244)
chr6 (230-294)||(1131415-1131479)
chr6 (230-294)||(14677385-14677448)
chr6 (230-292)||(15059810-15059872)
chr6 (231-278)||(31475173-31475219)
chr6 (234-278)||(34040421-34040465)
chr6 (231-294)||(33516978-33517040)
chr6 (231-277)||(9534331-9534376)
[»] chr1 (17 HSPs)
chr1 (231-308)||(5049096-5049173)
chr1 (231-298)||(23664509-23664576)
chr1 (230-294)||(21906020-21906084)
chr1 (230-294)||(26221340-26221403)
chr1 (231-294)||(22070145-22070208)
chr1 (230-312)||(48999049-48999130)
chr1 (231-312)||(27431171-27431252)
chr1 (234-294)||(34307846-34307905)
chr1 (231-278)||(1347121-1347167)
chr1 (231-294)||(36296358-36296420)
chr1 (231-294)||(42721895-42721957)
chr1 (240-298)||(9022867-9022925)
chr1 (231-278)||(48596759-48596806)
chr1 (232-278)||(9956586-9956631)
chr1 (231-292)||(28946200-28946260)
chr1 (231-276)||(32179194-32179238)
chr1 (227-281)||(33051753-33051806)
[»] scaffold0601 (1 HSPs)
scaffold0601 (230-294)||(6427-6491)
[»] chr5 (15 HSPs)
chr5 (231-314)||(9409930-9410013)
chr5 (231-314)||(42879239-42879321)
chr5 (229-311)||(39537766-39537847)
chr5 (231-294)||(2676608-2676671)
chr5 (231-312)||(13382982-13383062)
chr5 (231-294)||(5579003-5579066)
chr5 (231-294)||(13490034-13490097)
chr5 (234-293)||(18888714-18888773)
chr5 (230-294)||(38490701-38490764)
chr5 (231-278)||(41869418-41869464)
chr5 (231-291)||(7849977-7850036)
chr5 (231-278)||(6950353-6950399)
chr5 (231-278)||(43324121-43324167)
chr5 (231-291)||(14652123-14652182)
chr5 (232-292)||(33922691-33922751)
[»] scaffold0016 (5 HSPs)
scaffold0016 (231-306)||(89442-89517)
scaffold0016 (231-294)||(88028-88091)
scaffold0016 (231-294)||(88504-88567)
scaffold0016 (231-294)||(88980-89043)
scaffold0016 (231-280)||(87568-87617)
[»] chr3 (16 HSPs)
chr3 (229-312)||(53077349-53077432)
chr3 (231-294)||(19156736-19156799)
chr3 (231-278)||(25071278-25071325)
chr3 (231-294)||(27941913-27941976)
chr3 (238-312)||(15760509-15760582)
chr3 (231-294)||(6025144-6025206)
chr3 (231-278)||(10994534-10994581)
chr3 (231-301)||(52447788-52447858)
chr3 (231-294)||(23045260-23045322)
chr3 (231-294)||(31885333-31885395)
chr3 (231-278)||(36640723-36640769)
chr3 (231-278)||(1420207-1420253)
chr3 (231-278)||(22917793-22917839)
chr3 (231-278)||(30376917-30376963)
chr3 (231-294)||(1424344-1424406)
chr3 (230-278)||(9467871-9467917)
[»] chr2 (21 HSPs)
chr2 (230-312)||(19685438-19685519)
chr2 (231-296)||(2553702-2553767)
chr2 (231-312)||(33015574-33015654)
chr2 (231-292)||(44314441-44314502)
chr2 (231-292)||(44322620-44322681)
chr2 (231-296)||(41826357-41826422)
chr2 (231-294)||(2565275-2565337)
chr2 (230-294)||(90713-90776)
chr2 (231-307)||(7880699-7880774)
chr2 (231-278)||(18582958-18583004)
chr2 (231-294)||(18781561-18781623)
chr2 (231-294)||(22576379-22576442)
chr2 (231-294)||(45277865-45277927)
chr2 (225-294)||(6221022-6221091)
chr2 (242-291)||(40709902-40709951)
chr2 (230-278)||(38696797-38696844)
chr2 (235-294)||(14903684-14903743)
chr2 (231-290)||(33054399-33054457)
chr2 (231-292)||(19674457-19674517)
chr2 (231-299)||(24484160-24484227)
chr2 (231-275)||(25472663-25472706)
[»] scaffold0308 (1 HSPs)
scaffold0308 (231-312)||(12469-12550)
[»] scaffold0093 (1 HSPs)
scaffold0093 (230-307)||(50564-50641)
[»] scaffold0116 (1 HSPs)
scaffold0116 (231-309)||(40460-40537)
[»] scaffold0743 (1 HSPs)
scaffold0743 (232-278)||(3696-3741)
[»] scaffold0295 (1 HSPs)
scaffold0295 (246-280)||(4627-4661)
[»] scaffold0065 (1 HSPs)
scaffold0065 (234-298)||(65985-66048)


Alignment Details
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 42929768 - 42929559
Alignment:
Q  9 agcacagaccaatctattagctagtataatt-caaaaggccaaatattttaaataatgtgagnnnnnnnn-ctttcatcgaaaaaattatgtaccatatt 106  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  42929768 agcacacaccaatctactagctagtataatttcaaaaggccaaatattttaaataatgtgagtttttttttctttcatcgaaaaaattatgtaccatatt 42929669  T
Q  107 ttccacnnnnnnngtaaatgatagatggatttgcagaaaaatggaatttgaagggaacataataattagtggaaagtaaactacaactgaactaatcaca 206  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||    
T  42929668 ttccacaaaaaaagtaaatgatagatggatttgcagaaaaatggaatttgaagggaacataataat---------------cacaactgaactaatcaca 42929584  T
Q  207 agcccgtctcaaccaatcttgaggc 231  Q
    ||||||||||||||||||| |||||    
T  42929583 agcccgtctcaaccaatctcgaggc 42929559  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 10095485 - 10095405
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| || |||||| ||||||||||    
T  10095485 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggacccaaattt-tttttaaggt 10095405  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 39480714 - 39480651
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  39480714 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 39480651  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 6262080 - 6261997
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || || || ||||||||| |||  | ||||||||||||    
T  6262080 gcagggccggccctagggcataggccgcgagtgcgacggcctaagg-ccatgccggtagggggcccaaaagtttttttaaggtgt 6261997  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 14192764 - 14192702
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||    
T  14192764 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 14192702  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 14033775 - 14033729
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  14033775 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 14033729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 36213396 - 36213443
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||    
T  36213396 cagggccggccctagggcataggccgcgaatgcgacggcctacggccc 36213443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 49242563 - 49242625
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||| |  |||||||||    
T  49242563 cagggccggccctagg-cataggccgggagtgcgacggcctagggcccttgcccgtagggggcc 49242625  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 51337307 - 51337369
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  51337307 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 51337369  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 28143896 - 28143836
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||    
T  28143896 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 28143836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 38052595 - 38052638
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctaggg 275  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  38052595 cagggccggccctagg-cataggccgcgagtgcgacggcctaggg 38052638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 29283432 - 29283371
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    ||||||||||||||| | ||||||||| | |||||||||||||||||||||| || |||||||    
T  29283432 gcagggccggccctatg-cataggccgtgggtgcgacggcctagggcccttgccggtaggggg 29283371  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 7414188 - 7414127
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||| |||| || || |||||||    
T  7414188 cagggccggtcctaggggataggccacgagtgcgacggcctagagcccatgccggtaggggg 7414127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 7460269 - 7460208
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||| |||| || || |||||||    
T  7460269 cagggccggtcctaggggataggccacgagtgcgacggcctagagcccatgccggtaggggg 7460208  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 17648019 - 17647959
Alignment:
Q  233 gggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||| ||||||||| ||||||||||||||| |||||||| |  |||||||||    
T  17648019 gggccggccctagg-cataggccgggagtgcgacggcctacggcccttgcccgtagggggcc 17647959  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 56367332 - 56367285
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    ||||||||||||||||| |||||||||   |||||||||||||||||||    
T  56367332 gcagggccggccctagg-cataggccggaggtgcgacggcctagggccc 56367285  T

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Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 18667012 - 18667093
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||    
T  18667012 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgccggtagggggcccaaatttttttttaaggt 18667093  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 4539511 - 4539592
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||| |||||| ||||||||||    
T  4539511 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccgggagggggcccaaattt-tttttaaggt 4539592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 13753759 - 13753840
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||  || ||| ||||||||||    
T  13753759 cagggccggccctagggcataggccgcgagtgcgacagcctagggcccttgccggtagggggcggaattttttttttaaggt 13753840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 8389760 - 8389697
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  8389760 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 8389697  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 43823964 - 43824027
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||| || || |||||||||    
T  43823964 cagggccggtcctagggcataggccacgagtgcgacggcctagggcccatgccggtagggggcc 43824027  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 31072988 - 31072913
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgttttt 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |  || ||||||||| || ||| |||||    
T  31072988 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatcccggtagggggcccaatttttttttt 31072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 48238115 - 48238178
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  48238115 gcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 48238178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 15680168 - 15680122
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  15680168 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 15680122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 35478436 - 35478373
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| ||||||  | |||||||||    
T  35478436 cagggccagccctagggcataggccgcgagtgcgacggactaggacccttgctggtagggggcc 35478373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 48636360 - 48636422
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  48636360 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 48636422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 20395243 - 20395185
Alignment:
Q  234 ggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||| || |||||||    
T  20395243 ggccagccctagggcataggccacgagtgcgacggcctaggtcccttgccggtaggggg 20395185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 8069234 - 8069294
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||    
T  8069234 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtaggggg 8069294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 44733170 - 44733219
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccctt 280  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  44733170 cagggccggccctagggcataggtcgggagtgcgacggcctaaggccctt 44733219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 12379302 - 12379349
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  12379302 gcagggccggcccaagg-cataggccgcgagtgcgacggcctagggccc 12379349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 19312388 - 19312326
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| ||||||||| |||||||||||||||||| || || || |||||||||    
T  19312388 cagggccggccctagg-cataggccgtgagtgcgacggcctagggtccatgccggtagggggcc 19312326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 45446491 - 45446446
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggc 276  Q
    |||||||||||||||| ||||||||||||||| |||| ||||||||    
T  45446491 cagggccggccctaggccataggccgcgagtgtgacgacctagggc 45446446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 135357 - 135403
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||| |||||| || |||||||||||||||||||||    
T  135357 cagggccggccctagg-cataggtcgggagtgcgacggcctagggccc 135403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 37549237 - 37549188
Alignment:
Q  228 aggcagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    ||||||||||||||||||| ||||||||  | |||||||||||||||||||    
T  37549237 aggcagggccggccctagg-cataggccaggggtgcgacggcctagggccc 37549188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 6189830 - 6189798
Alignment:
Q  246 ggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||| ||||||||||||||||||||||    
T  6189830 ggcataggccacgagtgcgacggcctagggccc 6189798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 3762339 - 3762420
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| || ||| ||||||||||    
T  3762339 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaattttttttttaaggt 3762420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 1981234 - 1981314
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||  |||||| ||||||||||    
T  1981234 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggctcaaattt-tttttaaggt 1981314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 7973444 - 7973359
Alignment:
Q  229 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtgt 314  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || || ||||||||| |||  | ||||||||||||    
T  7973444 ggcagggccggccctagggcataggccacgagtgcgacggcctagggcccatgccggtagggggcccaaaagtttttttaaggtgt 7973359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 45117137 - 45117208
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg-ccaaaattt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |||||||||    
T  45117137 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggtccaaaattt 45117208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 40971089 - 40971170
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||  | ||||||| | || ||| ||||||||||    
T  40971089 cagggccggccctagggcataggccgcgagtgcgatggcctagggcccttgctggtagggggtccaattttttttttaaggt 40971170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 16729378 - 16729445
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaa 298  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||| ||||||    
T  16729378 cagggccggccctagggcataggtcacgagtgcgacggcctagggcccttgccggtaggggcccaaaa 16729445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 31597165 - 31597244
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||  |||||| ||||||||||    
T  31597165 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggggctcaaattt-tttttaaggt 31597244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 7264091 - 7264041
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttg 281  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  7264091 cagggccggccctagggcataggccacgagtgcgacggtctagggcccttg 7264041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 6927983 - 6927907
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgttttta 308  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||  ||||| ||||||    
T  6927983 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggccctaattttttttta 6927907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 3509845 - 3509909
Alignment:
Q  229 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||  |||||||||    
T  3509845 ggcagggtcggccctagg-cataggccgcgagtgcgacggcctaggacccatgtctgtagggggcc 3509909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 313
Target Start/End: Original strand, 39905874 - 39905954
Alignment:
Q  232 agggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtg 313  Q
    ||||| ||||||| |||||||||||||||| |||||||||| |||||||  || |||||||||  ||||| |||||||||||    
T  39905874 agggctggccctacggcataggccgcgagttcgacggcctacggcccttaccggtagggggcc-caatttttttttaaggtg 39905954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 4432531 - 4432468
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| ||||| || | |||||||    
T  4432531 cagggccggcccaagggcataggccgcaattgcgacggcctagggtccttgccggtggggggcc 4432468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 11995159 - 11995097
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| |||||||| ||||||||| |||||||||||| || || |||||||||    
T  11995159 cagggccggccctagg-cataggccacgagtgcgatggcctagggcccatgccggtagggggcc 11995097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 232 - 313
Target Start/End: Original strand, 18674997 - 18675078
Alignment:
Q  232 agggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtg 313  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||| | ||||||||||||||||||    
T  18674997 agggccggccctaaggcataggccgcgggtgcgacggcctagggcccttgccggtagggggtccaaatttgtttttaaggtg 18675078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 20990098 - 20990166
Alignment:
Q  229 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaa 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  20990098 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgccggtaggggcccaaa 20990166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 1603013 - 1603074
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||    
T  1603013 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 1603074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 22012575 - 22012514
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||    
T  22012575 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 22012514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 21442392 - 21442468
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttt 306  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| || || || ||||||||| |||||| ||||    
T  21442392 gcagggccggccctagagcataggccgcgagtgcgacggcctagggtccatgccggtagggggcccaaatttttttt 21442468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 34043181 - 34043244
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||||||    
T  34043181 cagggccggccctagggcataggccgcgagtgtgacggcctagggcccatgccggtagggggcc 34043244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 1131415 - 1131479
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||||||||||||||||||||||  |||||||||||||||| ||||||| || |||||||||    
T  1131415 gcagggccggccctagggcataggccaagagtgcgacggcctagagcccttgccggtagggggcc 1131479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 14677385 - 14677448
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||    
T  14677385 gcagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 14677448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 15059810 - 15059872
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||| ||||| |||||||    
T  15059810 gcagggccggccctagggcatatgccgggagtgcaacggcctagggcccatgtcggtaggggg 15059872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 31475219 - 31475173
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  31475219 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 31475173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 34040465 - 34040421
Alignment:
Q  234 ggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    ||||||||||||||||||| || ||||||||||||||||||||||    
T  34040465 ggccggccctagggcatagaccacgagtgcgacggcctagggccc 34040421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 33517040 - 33516978
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| |||||||| ||||||| |||||||||||||| || || |||||||||    
T  33517040 cagggccggccctagg-cataggccacgagtgcaacggcctagggcccatgccggtagggggcc 33516978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 9534376 - 9534331
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcc 277  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  9534376 cagggccggccctagg-cataggccgcgagtgcgacggcctaaggcc 9534331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 5049096 - 5049173
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgttttta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||||| ||||||    
T  5049096 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcccaaattttttttta 5049173  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 23664576 - 23664509
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaa 298  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||    
T  23664576 cagggccggccctagggcatacgccacgagtgcgacggcctagggcccttgtcggtaggggcccaaaa 23664509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 21906020 - 21906084
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||    
T  21906020 gcagggccggccctagggcataggccgcgagtgcgacggcctagggtccatgccggtagggggcc 21906084  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 26221340 - 26221403
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  26221340 gcagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgtcggtagggggcc 26221403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 22070145 - 22070208
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| || || |||||||||    
T  22070145 cagggccggccctagggcataggccgtgagtgcgacggcctagggcccatgccggtagggggcc 22070208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 48999049 - 48999130
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||| ||  | |||| |||| |||||| ||||||||||    
T  48999049 gcagggtcggccatagggcataggccgcgagtgcgacggcctagggcccatgctggtaggaggcccaaattt-tttttaaggt 48999130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 27431252 - 27431171
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    |||||| ||||||||||||||||||||||||| ||||||||||| ||| || || ||||||| | || ||| ||||||||||    
T  27431252 cagggctggccctagggcataggccgcgagtgtgacggcctaggacccatgccggtagggggtccaattttttttttaaggt 27431171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 34307905 - 34307846
Alignment:
Q  234 ggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||    
T  34307905 ggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggggcc 34307846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 1347167 - 1347121
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  1347167 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 1347121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 36296358 - 36296420
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  36296358 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 36296420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 42721895 - 42721957
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  42721895 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 42721957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 9022867 - 9022925
Alignment:
Q  240 ccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaa 298  Q
    ||||||||||||||||| |||||||| |||||||||||| || || |||||||||||||    
T  9022867 ccctagggcataggccgggagtgcgatggcctagggcccatgccggtagggggccaaaa 9022925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 48596806 - 48596759
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||    
T  48596806 cagggccggccctaaggcataggtcgcgagtgcgacggcctagagccc 48596759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 9956586 - 9956631
Alignment:
Q  232 agggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||    
T  9956586 agggccggccctagg-cacaggccgcgagtgcgacggcctagggccc 9956631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 28946260 - 28946200
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    |||||||||||||||| |||||||| |||||||||||||||| ||||| || || |||||||    
T  28946260 cagggccggccctagg-cataggccacgagtgcgacggcctaaggcccatgccggtaggggg 28946200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 32179238 - 32179194
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggc 276  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||    
T  32179238 cagggccggccttagg-cataggccgcgagtgcgacggcctagggc 32179194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 33051806 - 33051753
Alignment:
Q  227 gaggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttg 281  Q
    ||||||| |||||||||||| |||||| || ||||||||| ||||||||||||||    
T  33051806 gaggcagagccggccctagg-cataggtcgggagtgcgacagcctagggcccttg 33051753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 6427 - 6491
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  6427 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgccggtagggggcc 6491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 9410013 - 9409930
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg-ccaaaatttgtttttaaggtgt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| || ||||||||||||    
T  9410013 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgtcggtagggggtccaaaagtt-tttttaaggtgt 9409930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 42879239 - 42879321
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggtgt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |||||| || ||||||||||||    
T  42879239 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggcccaaaagtt-tttttaaggtgt 42879321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 39537847 - 39537766
Alignment:
Q  229 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaagg 311  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||| |||||| |||||||||    
T  39537847 ggcagggccggccctagggcataggccgcaagtgcgacggcctagggcctttgccggtagggggcccaaattt-tttttaagg 39537766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 2676608 - 2676671
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  2676608 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 2676671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 13383062 - 13382982
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||| ||| || ||||||||||    
T  13383062 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccgttagggggcccaaaattttttttaaggt 13382982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 5579066 - 5579003
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||    
T  5579066 cagggccggccctagggcataggccacgagtgcgacgggctagggcccttgccggtagggggcc 5579003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 13490034 - 13490097
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||| || |||||||||    
T  13490034 cagggccggccctaagccataggccgcgagtgcgacggcctagggcccttgccggtagggggcc 13490097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 18888714 - 18888773
Alignment:
Q  234 ggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||    
T  18888714 ggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggc 18888773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 38490701 - 38490764
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  38490701 gcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 38490764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 41869418 - 41869464
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  41869418 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 41869464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 7849977 - 7850036
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggg 291  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || ||||||    
T  7849977 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggg 7850036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 6950353 - 6950399
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  6950353 cagggccggtcctagg-cataggccacgagtgcgacggcctagggccc 6950399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 43324167 - 43324121
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||||    
T  43324167 cagggccggccctagg-cataggccgggggtgcgacggcctagggccc 43324121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 14652182 - 14652123
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggg 291  Q
    ||||||||| |||||| |||||||| ||||||||| |||||||||||| || || ||||||    
T  14652182 cagggccggtcctagg-cataggccacgagtgcgatggcctagggcccatgccggtagggg 14652123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 33922751 - 33922691
Alignment:
Q  232 agggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    ||||||||||||||| ||||||||| | || ||||||||||||| ||| | || |||||||    
T  33922751 agggccggccctaggccataggccgggggtacgacggcctagggtcctagccggtaggggg 33922691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 89517 - 89442
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttt 306  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  89517 cagggccggccctaaggcataggccccgagtgcgacggcctagggcccttgtcggtagggggcccaaatttttttt 89442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 88091 - 88028
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||  || |||||||||    
T  88091 cagggccggcactaaggcataggccgcgagtgcgacggcctagggccctttccggtagggggcc 88028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 88567 - 88504
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||||||  || |||||||||    
T  88567 cagggccggcactaaggtataggccgcgagtgcgacggcctagggccctttccggtagggggcc 88504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 89043 - 88980
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||||||  || |||||||||    
T  89043 cagggccggcactaaggtataggccgcgagtgcgacggcctagggccctttccggtagggggcc 88980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 87617 - 87568
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccctt 280  Q
    |||||||||||||| ||||||||  |||||||||||||| ||||||||||    
T  87617 cagggccggccctaaggcatagggtgcgagtgcgacggcgtagggccctt 87568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 53077432 - 53077349
Alignment:
Q  229 ggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| ||| |  ||||||||||    
T  53077432 ggcagggccggccctagggcataggccacgagtgcgacggcctagggcccatgccgatagggggcccaaaataatttttaaggt 53077349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 19156736 - 19156799
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  19156736 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 19156799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 25071278 - 25071325
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25071278 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 25071325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 27941976 - 27941913
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||    
T  27941976 cagggccggccctagggcataagccgcgagtgcgacggcctagggcccatgccggtagggggcc 27941913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 15760509 - 15760582
Alignment:
Q  238 ggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    |||||| |||||||||||||||||||||||||||||||||| || || |||||| |||||| |||||||||||||    
T  15760509 ggcccttgggcataggccgcgagtgcgacggcctagggcccatgccggtaggggcccaaaa-ttgtttttaaggt 15760582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 6025206 - 6025144
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||    
T  6025206 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 6025144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 10994581 - 10994534
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  10994581 cagggccggccctagggcataggccgcgagtgcgacggtctagggccc 10994534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 52447788 - 52447858
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaattt 301  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||| ||||||| || ||||||||| ||||||    
T  52447788 cagggacggccctagggcataggccgcaagtgcgacgacctagagcccttgccggtagggggcccaaattt 52447858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 23045322 - 23045260
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  23045322 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 23045260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 31885395 - 31885333
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  31885395 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 31885333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 36640723 - 36640769
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  36640723 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 36640769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 1420253 - 1420207
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  1420253 cagggccggccctagg-cataggctgcgagtgcgacggcctagggccc 1420207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 22917793 - 22917839
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  22917793 cagggccggccctagg-cataggccgcgagtgtgacggcctagggccc 22917839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 30376917 - 30376963
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  30376917 cagggccgaccctagg-cataggccgcgagtgcgacggcctagggccc 30376963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 1424344 - 1424406
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||||||||||||  |||||||| | ||||||||||||||||||| || || |||||||||    
T  1424344 cagggccggccctaggt-ataggccgggggtgcgacggcctagggcccatgccggtagggggcc 1424406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 9467917 - 9467871
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||||||    
T  9467917 gcagggccggccctagg-cataggccggg-gtgcgacggcctagggccc 9467871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 19685438 - 19685519
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||| |||||| ||||||||||    
T  19685438 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggaggcccaaattt-tttttaaggt 19685519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 2553702 - 2553767
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaa 296  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| ||||    
T  2553702 cagggccggccctagggcataggccacgagtgcgacggcctagggcccttgccggtaggggcccaa 2553767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 33015654 - 33015574
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||| ||| || ||||||||||    
T  33015654 cagggccggccctagggcataggccgcgagtgtgacggcctagggcccatgccggtagggggcccaaaatt-tttttaaggt 33015574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 44314502 - 44314441
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||    
T  44314502 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 44314441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 44322681 - 44322620
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||    
T  44322681 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccatgccggtaggggg 44322620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 41826422 - 41826357
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaa 296  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||| || |||||| ||||    
T  41826422 cagggccggccctagggcataggccacgagtacgacggcctagggcccttgccggtaggggcccaa 41826357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 2565275 - 2565337
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||    
T  2565275 cagggccggccctagg-cataggccgcgagtgcgacggcctagggcccatgccggtagggggcc 2565337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 90776 - 90713
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  90776 gcagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 90713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 7880774 - 7880699
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgttttt 307  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||  ||||| |||||    
T  7880774 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccgttagggggccctaattttttttt 7880699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 18583004 - 18582958
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  18583004 cagggccggccctagg-cataggccgcgagtgcgacggcctagggccc 18582958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 18781623 - 18781561
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  18781623 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 18781561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 22576442 - 22576379
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||||| || || |||||||||    
T  22576442 cagggccagccctagggcataggccatgagtgcgacggcctagggcccatgccggtagggggcc 22576379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 45277927 - 45277865
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||| || || |||||||||    
T  45277927 cagggccggccctagg-cataggccacgagtgcgacggcctagggcccatgccggtagggggcc 45277865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 6221022 - 6221091
Alignment:
Q  225 ttgaggcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||||| ||||  || || |||||||||    
T  6221022 ttgaagcagagccggccctagagcataggccgcgagtgcgacggcctaaggcctatgccggtagggggcc 6221091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 40709951 - 40709902
Alignment:
Q  242 ctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggg 291  Q
    ||||||||||||||||||||||||||||||||||||| || || ||||||    
T  40709951 ctagggcataggccgcgagtgcgacggcctagggcccatgccggtagggg 40709902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 38696797 - 38696844
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  38696797 gcagggccggccctagg-cataggctgcgagtgcgacggcctagggccc 38696844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 14903684 - 14903743
Alignment:
Q  235 gccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggcc 294  Q
    |||||||||||| ||||||||| | ||||||||||||| |||||||| || |||||||||    
T  14903684 gccggccctaggccataggccgggggtgcgacggcctatggcccttgccggtagggggcc 14903743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 33054399 - 33054457
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggg 290  Q
    |||||||||||||||| |||||| || | |||||||||||||||||||||| ||||||||    
T  33054399 cagggccggccctaggccataggtcggg-gtgcgacggcctagggcccttgccgataggg 33054457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 19674457 - 19674517
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgataggggg 292  Q
    |||||||||||||||| |||||| | | |||||||||||||||||||| || || |||||||    
T  19674457 cagggccggccctagg-cataggtcacaagtgcgacggcctagggcccatgccggtaggggg 19674517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 24484160 - 24484227
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaat 299  Q
    |||||||||||||||| ||||| ||| | ||||||||||||||||||| || |  ||||||||| ||||    
T  24484160 cagggccggccctagg-catagtccgggggtgcgacggcctagggcccatgccattagggggcccaaat 24484227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 25472706 - 25472663
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctaggg 275  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||    
T  25472706 cagggccggccctagg-cataggccgtgagtgcaacggcctaggg 25472663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 12550 - 12469
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaaggt 312  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| || || ||||||||| ||| || ||||||||||    
T  12550 cagggccggccctagggcataggccgcgagtgcgacgtcctagggcccatgccggtagggggcccaaaattttttttaaggt 12469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 50564 - 50641
Alignment:
Q  230 gcagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgttttt 307  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| | || || ||||||||| ||| || |||||    
T  50564 gcagggccggccctagggcataggccgcaagtgcgacggcctagggcacatgccggtagggggcccaaactttttttt 50641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 40460 - 40537
Alignment:
Q  231 cagggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaatttgtttttaa 309  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||| || |  |||||||||  || ||||||||||    
T  40460 cagggccggccctagg-cataggccgggggtgcgacggcctagggcccatgccattagggggccctaaattgtttttaa 40537  T

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Target: scaffold0743 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 3741 - 3696
Alignment:
Q  232 agggccggccctagggcataggccgcgagtgcgacggcctagggccc 278  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||||    
T  3741 agggccggccctagg-cataggccatgagtgcgacggcctagggccc 3696  T

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Target: scaffold0295 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Original strand, 4627 - 4661
Alignment:
Q  246 ggcataggccgcgagtgcgacggcctagggccctt 280  Q
    |||||||||||||||||||| ||||||||||||||    
T  4627 ggcataggccgcgagtgcgatggcctagggccctt 4661  T

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Target: scaffold0065 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 65985 - 66048
Alignment:
Q  234 ggccggccctagggcataggccgcgagtgcgacggcctagggcccttgtcgatagggggccaaaa 298  Q
    ||||||||||||| ||||||||| | ||||||||||||||||| | || |  |||||||||||||    
T  65985 ggccggccctagg-cataggccgggggtgcgacggcctagggcgcatgcccgtagggggccaaaa 66048  T

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