View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20402_high_11 (Length: 320)

Name: NF20402_high_11
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20402_high_11
NF20402_high_11
[»] chr5 (2 HSPs)
chr5 (5-178)||(1537656-1537830)
chr5 (231-302)||(1537850-1537920)
[»] chr7 (5 HSPs)
chr7 (81-146)||(46641786-46641851)
chr7 (81-165)||(46172995-46173079)
chr7 (223-285)||(46620350-46620412)
chr7 (222-285)||(46639067-46639130)
chr7 (81-165)||(46630704-46630788)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 1537656 - 1537830
Alignment:
Q  5 gacagaaaagaagcacatgataatcctgataatgatggaaacaagatggttgaaagccggaaattatatcaacacgcttgtgatgttgattctttggaac 104  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1537656 gacaaaaaagaagcacatgataatcctgataatgatggaaacaagatggttgaaagccggaaattatatcaacacgcttgtgatgttgattctttggaac 1537755  T
Q  105 agcatgctgatataaatctctggagacaaatcactagaaacaaaccattgaaagttagagcg-ttgcaatcagaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1537756 agcatgctgatataaatctctggagacaaatcactagaaacaaaccattgaaagttagagcgtttgcaatcagaa 1537830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 1537850 - 1537920
Alignment:
Q  231 agcccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatgatgcgtcggtctttgtt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  1537850 agcccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatgatgcttc-gtctttgtt 1537920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 46641851 - 46641786
Alignment:
Q  81 cttgtgatgttgattctttggaacagcatgctgatataaatctctggagacaaatcactagaaaca 146  Q
    ||||||||||||||||||||||| | || ||||||||||||||  ||||||||| |||||||||||    
T  46641851 cttgtgatgttgattctttggaaaaacaggctgatataaatctgaggagacaaagcactagaaaca 46641786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 46173079 - 46172995
Alignment:
Q  81 cttgtgatgttgattctttggaacagcatgctgatataaatctctggagacaaatcactagaaacaaaccattgaaagttagagc 165  Q
    |||||||||||| |||||||||||| ||  |||||||||||| | ||||||| | ||||||||||| ||| |||| |||||||||    
T  46173079 cttgtgatgttggttctttggaacaacagcctgatataaatcccaggagacagagcactagaaacagaccgttgacagttagagc 46172995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 46620350 - 46620412
Alignment:
Q  223 atccagacagcccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatg 285  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||   ||||||||| ||||    
T  46620350 atccagacacaccaagatcctttcaatccttgccgcaaggctcgtacatgaggcaaaataatg 46620412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 46639067 - 46639130
Alignment:
Q  222 catccagacagcccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatg 285  Q
    ||||||||||  ||||||||||||||||||||| |||||| ||||||   ||||||||| ||||    
T  46639067 catccagacacaccaagatcctttcaatccttgtcgcaaggctcgtacatgaggcaaaataatg 46639130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 46630704 - 46630788
Alignment:
Q  81 cttgtgatgttgattctttggaacagcatgctgatataaatctctggagacaaatcactagaaacaaaccattgaaagttagagc 165  Q
    |||||||||||| ||| |||||||| ||  ||||||||||||   ||||||| | || |||||| | |||||||| |||||||||    
T  46630704 cttgtgatgttggttcgttggaacaacagcctgatataaatccgaggagacagagcaatagaaaaagaccattgacagttagagc 46630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University