View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_high_13 (Length: 309)
Name: NF20402_high_13
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 147 - 291
Target Start/End: Complemental strand, 29024422 - 29024282
Alignment:
| Q |
147 |
agtttatttttgttatgagtattttgattatgtatggaccatgggatcctctcattacttatgtgtttcccaaaccaagttccctttgtttggtgtgttt |
246 |
Q |
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| T |
29024422 |
agtttatttttgttgtgagtattttgattatgtatggaacatgggatcctc--attacttatgt--ttcccaaaccaagtcccctttgtttggcatgttt |
29024327 |
T |
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| Q |
247 |
ttgttgaaataaaagtggattgaattccatgcttaaagatggatc |
291 |
Q |
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| T |
29024326 |
ttgttgaaataaaagtggattgaattccatgcttaaagatggatc |
29024282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 29024641 - 29024550
Alignment:
| Q |
15 |
tgctgaagaaccattagttgatgatgataatgatgtcgctgaagaacttgttgttgaagaggaagacatggatgatgatagtagcaactcaa |
106 |
Q |
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| T |
29024641 |
tgctgaagaaccattagttgatgatgataatgatgtcgctgaagaacttgttgttgaagaggaagacatggatgatgatagtagcaactcaa |
29024550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 197 - 290
Target Start/End: Complemental strand, 36066972 - 36066877
Alignment:
| Q |
197 |
ctcattacttatgtgtttcccaaaccaagttccc-tttgtttggtgtgtttttgttgaaataaaa-gtggattgaattccatgcttaaagatggat |
290 |
Q |
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| T |
36066972 |
ctcattacatatgtgcttcccaacccaagttcccctttgtttggtttgtttttgttgaaataaaaagtggattgaattccacgcttaaagatggat |
36066877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 36067288 - 36067216
Alignment:
| Q |
34 |
gatgatgataatgatgtcgctgaagaacttgttgttgaagaggaagacatggatgatgatagtagcaactcaa |
106 |
Q |
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| T |
36067288 |
gatgatgataatgatgttgctgatgaacttgttgttgaagaggataatagtgatgatgatagtagcaactcaa |
36067216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 47508201 - 47508268
Alignment:
| Q |
198 |
tcattacttatgtgtttcccaaaccaagttccctttgtttggtgtg-tttttgttgaaataaaagtgg |
264 |
Q |
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| T |
47508201 |
tcattacctatgtgctgcccaacccaagttccctttctttggtatgttttttgttgaaataaaagtgg |
47508268 |
T |
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