View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_high_15 (Length: 294)
Name: NF20402_high_15
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_high_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 42875201 - 42875477
Alignment:
| Q |
18 |
atatcaatacaatgcaacaaatcccactgattcttttcaacatgttcccaaactctcaaatcattttgtctaatatcagctatcctcaaacgactacaag |
117 |
Q |
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| T |
42875201 |
atatcaatacaatgcaacaaatcccactgattcttttcaacatgttcccaaactctcaaatcatgttgtctaatatcagctatcctcaaacgactacaag |
42875300 |
T |
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| Q |
118 |
agatcccgagaaacccacaactcactatattcatcgcatcggcttccgatggataattaatagtgtacctttttcttgaataaggatcaaacacaaaaat |
217 |
Q |
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| T |
42875301 |
agatcccgagaaacccacaactcactatattcatcgcatcggcttccgatggataattaatagtgtacctttttcttgaataaggatcaaacacaaaaat |
42875400 |
T |
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| Q |
218 |
gtttgccctccccatgaaatacagctttccacagtatgaaaaacttagaagccaatgaggagcaaaagcgaagccct |
294 |
Q |
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| T |
42875401 |
gtttgccctccccatgaaatacagctttccacagtatgaaaaactcagaagccaatgaggagcaaaagcgaagccct |
42875477 |
T |
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Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 289
Target Start/End: Original strand, 1049715 - 1049975
Alignment:
| Q |
29 |
atgcaacaaatcccactgattcttttcaacatgttcccaaactctcaaatcattttgtctaatatcagctatcctcaaacgactacaagagatcccgaga |
128 |
Q |
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| T |
1049715 |
atgcaacaaatcccaatgattcttttcaacaagttcccaaactctcaaattattttgtccaatatcagctatcctcaaacaaccacaagagattccaagg |
1049814 |
T |
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| Q |
129 |
aacccacaactcactatattcatcgcatcggcttccgatggataattaatagtgtacctttttcttgaataaggatcaaacacaaaaatgtttgccctcc |
228 |
Q |
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| T |
1049815 |
aaaccaaaactcattatgttcattgaatcagcttctaagggataattaagggtatcccttgtgtttgtataaggatcaaacacaaaaatgcttgtcctcc |
1049914 |
T |
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| Q |
229 |
ccatgaaatacagctttccacagtatgaaaaacttagaagccaatgaggagcaaaagcgaa |
289 |
Q |
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| T |
1049915 |
ccatgaaatacaagcttccaccataggaaaaacttagtagccaatgaggagcaaaagcgaa |
1049975 |
T |
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