View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_high_16 (Length: 283)
Name: NF20402_high_16
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 43341730 - 43341995
Alignment:
| Q |
17 |
caaatctctctggcatgaactcttcagggttttcccaatttttagggtctctttgtattgcccatgagtttacatataccattgttttttcaggaatatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43341730 |
caaatctctctggcatgaactcttcagggttttcccaatttttagggtctctttgtattgcccatgagtttacatataccattgttttttcaggaatatt |
43341829 |
T |
|
| Q |
117 |
gtacccttttagattcacactagatattgtttcacgtggagccataagaggagtagctggatggaaccttagaatttctttcactacacactttaaataa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43341830 |
gtacccttttagattcacactagatattgtttcacgtggagccataagaggagtagctggatggaaccttagaatttctttcactacacactttaaataa |
43341929 |
T |
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| Q |
217 |
tgcatttggttgatgtcatctttttcaacttttgacttattgcctacaactcttcttacttcttct |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43341930 |
tgcatttggttgatgtcatctttttcaacttttgacttattgcctacaactcttcttacttcttct |
43341995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 43359440 - 43359705
Alignment:
| Q |
17 |
caaatctctctggcatgaactcttcagggttttcccaatttttagggtctctttgtattgcccatgagtttacatataccattgttttttcaggaatatt |
116 |
Q |
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|||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| || | ||||||| |||||||| ||||||| | |
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| T |
43359440 |
caaacctctctggcttgaactcttcagggttttcccaatatttagggtctctttgtattgtccatgcattaaaatataccgttgtttttgcaggaatgtc |
43359539 |
T |
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| Q |
117 |
gtacccttttagattcacactagatattgtttcacgtggagccataagaggagtagctggatggaaccttagaatttctttcactacacactttaaataa |
216 |
Q |
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| T |
43359540 |
gtatccttttagtttcacgctagatattgtttctcgaggaaccaaaagaggaagagatggatgtaatctcatagtttctttcactacacactttaaataa |
43359639 |
T |
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| Q |
217 |
tgcatttggttgatgtcatctttttcaacttttgacttattgcctacaactcttcttacttcttct |
282 |
Q |
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|||||||| |||||||||| || ||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
43359640 |
tgcatttgattgatgtcattttcttctacttttgatttattgcctacaactcttcttacttcttct |
43359705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 34417837 - 34417675
Alignment:
| Q |
17 |
caaatctctctggcatgaactcttcagggttttcccaatttttagggtctctttgtattgcccatgagtttacatataccattgttttttcaggaatatt |
116 |
Q |
| |
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|||||||||| || | |||||||| || |||||||| || |||||| || || |||||||||| ||| ||||||||||||||||| |||||||||| |
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| T |
34417837 |
caaatctctcaggtagaaactcttctggcatttcccaaaattcagggtccctatggattgcccatgtgttgacatataccattgttttatcaggaatatc |
34417738 |
T |
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| Q |
117 |
gtacccttttagattcacactagatattgtttcacgtggagccataagaggagtagctggatg |
179 |
Q |
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||||| || || ||||||||| |||||| | ||||||| |||||||| ||||||||| |
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| T |
34417737 |
atacccaccgagtttaacactagatgttgtttttctaggagccaaaagaggagcagctggatg |
34417675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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