View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_high_20 (Length: 250)
Name: NF20402_high_20
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 42875577 - 42875812
Alignment:
| Q |
3 |
caactcgaaaattgtgtttatttgaacgacgagcggtcaccttctgcttcggtttgcaaacaaatcccacggcatataaattttcgatacacgtcaaagg |
102 |
Q |
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| T |
42875577 |
caactcgaaaattgtgtttatttgaacgacgagcggtcaccttctgcttcggtttgcaaacaaatcccacggcgtataaattttcgatacacgtcaaagg |
42875676 |
T |
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| Q |
103 |
aggagaaggatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataag |
202 |
Q |
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| T |
42875677 |
aggagaaggatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataag |
42875776 |
T |
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| Q |
203 |
ccgttggaacaaccgcatatgctgctgcctttacct |
238 |
Q |
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| T |
42875777 |
ccgttggaacaaccgcatatgctgctgcctttacct |
42875812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 225
Target Start/End: Complemental strand, 42751258 - 42751144
Alignment:
| Q |
111 |
gatcaggtatatcgatacgccctttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttgga |
210 |
Q |
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| T |
42751258 |
gatcaggtatatggatacactctttaacgagtggatcataaacataatagacggtagcacatgtgtcccgattcttagaacacaagaataaaccattgga |
42751159 |
T |
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| Q |
211 |
acaaccgcatatgct |
225 |
Q |
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| T |
42751158 |
acaaccacatatgct |
42751144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 1050207 - 1050295
Alignment:
| Q |
133 |
tttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttggaacaaccgcata |
221 |
Q |
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| T |
1050207 |
tttcataagtggatcgtaaatataatagtcgataccataggtgtatcgattcttacaacacaagaataaaccgttggaacaaccgcata |
1050295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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