View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_high_25 (Length: 243)
Name: NF20402_high_25
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 4370309 - 4370518
Alignment:
| Q |
20 |
ggtcctactctctgcgtcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaactta |
119 |
Q |
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| T |
4370309 |
ggtcctactctctgcgtcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaactta |
4370408 |
T |
|
| Q |
120 |
acttcatccgtcaaatatttccctctaatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370409 |
acttcatccgtcaaatatttccctctaatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcat |
4370508 |
T |
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| Q |
220 |
cactctgtgc |
229 |
Q |
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|||||||||| |
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| T |
4370509 |
cactctgtgc |
4370518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 4365930 - 4366120
Alignment:
| Q |
35 |
gtcaaccgatccatcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaa |
134 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4365930 |
gtcagccgatccatcaaccattatggtgcaacctgttactttccatatagctctatgttcctccaaagcttcatttgtcaacttaacttcatccgtcaaa |
4366029 |
T |
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| Q |
135 |
tatttccctctaatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactct |
225 |
Q |
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| T |
4366030 |
tatttccctctaatctcatcataagacggtggattaaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactct |
4366120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 5725366 - 5725187
Alignment:
| Q |
46 |
catcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctct |
145 |
Q |
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|||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||| | |
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| T |
5725366 |
catcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt |
5725267 |
T |
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| Q |
146 |
aatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactct |
225 |
Q |
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| T |
5725266 |
aatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactct |
5725187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 223
Target Start/End: Original strand, 4360539 - 4360716
Alignment:
| Q |
46 |
catcaaccattatggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctct |
145 |
Q |
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|||| ||||||||| |||||||||| | |||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||| |||||||||| || |
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| T |
4360539 |
catcgaccattatgctgcaacctgtgatcttccacatagctctatgttcttccaaaacttcattcgtcaacttaatttcttccggaaaatatttccatcc |
4360638 |
T |
|
| Q |
146 |
aatctcatcataagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcact |
223 |
Q |
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||| ||| | |||||||||||||||| |||| |||||||||||||||||| |||| || |||||||||||||| |
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| T |
4360639 |
aatatcaaagaaccccggtggcttaaatcctacgccatgtcttgaaaccaaatcacacattgtcttaaattcatcact |
4360716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 225
Target Start/End: Complemental strand, 4414360 - 4414209
Alignment:
| Q |
75 |
ttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccc-tctaatctcatcataagacggtggcttaaat |
173 |
Q |
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||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||| |||||||||||| | ||| |||||| |||| |||||| |||| |
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| T |
4414360 |
ttccatatagctctatgttctaccaaagcttcctttgtcaacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaat |
4414261 |
T |
|
| Q |
174 |
ccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactct |
225 |
Q |
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||| || |||||||||||||| | | ||||||| |||| |||||||||| |
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| T |
4414260 |
cctaacccatgtcttgaaaccaactgacacatagtaataaactcatcactct |
4414209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 4385103 - 4385178
Alignment:
| Q |
85 |
ctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataaga |
160 |
Q |
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||||||| ||||||||||||| ||| |||||||||||| ||| ||||||| |||||||||||||||||| |||| |
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| T |
4385103 |
ctctatgatcttccaaagctttattcaccaacttaacttcttccctcaaatacttccctctaatctcatcaaaaga |
4385178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 4390224 - 4390294
Alignment:
| Q |
93 |
tcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg |
163 |
Q |
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| T |
4390224 |
tcttccaaagcttcattcaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg |
4390294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 4377544 - 4377611
Alignment:
| Q |
96 |
tccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacgg |
163 |
Q |
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|||||||||| ||| |||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |
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| T |
4377544 |
tccaaagctttattgaccaacttaacttcttccctcaaatacttccctttaatctcatcaaaagacgg |
4377611 |
T |
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