View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_high_5 (Length: 430)
Name: NF20402_high_5
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 332 - 416
Target Start/End: Original strand, 4002524 - 4002609
Alignment:
| Q |
332 |
cagcaatctgcacaatgcagtgataacagacaactatcaaactatcagatctaaattaaatcaagag-tttgtattcttcagattt |
416 |
Q |
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| T |
4002524 |
cagcaatctgcaaaatgcagtgataacagacaactatcaaactatcagatctaaattaaaccaagagttttgtattcttcagattt |
4002609 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 30363100 - 30363071
Alignment:
| Q |
20 |
cttgatctccaaaaaatgacgcgacaacaa |
49 |
Q |
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| T |
30363100 |
cttgatctccaaaaaatgacgcgacaacaa |
30363071 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 39537393 - 39537421
Alignment:
| Q |
20 |
cttgatctccaaaaaatgacgcgacaaca |
48 |
Q |
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| T |
39537393 |
cttgatctccaaaaaatgacgcgacaaca |
39537421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 46391454 - 46391426
Alignment:
| Q |
20 |
cttgatctccaaaaaatgacgcgacaaca |
48 |
Q |
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| T |
46391454 |
cttgatctccaaaaaatgacgcgacaaca |
46391426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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