View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_high_6 (Length: 407)
Name: NF20402_high_6
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 394
Target Start/End: Original strand, 37899562 - 37899955
Alignment:
| Q |
10 |
attatacttagatatgaattgttcgatgacaccaacatcgtcagatgccttcttaacgatataattcctatacttcttcacgacatttccttcaccaacc |
109 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37899562 |
attatacttagacatgaactgttcgatgacaccaacatcgtcagatgccttcttaacggcataattcctatacttcttcacgacatttccttcaccaacc |
37899661 |
T |
|
| Q |
110 |
tcaaccttgaaaagaacttgcttgtcaataagcacattaaaatcaggaggataatcacaggctccttctccctattgaaaatttagaagatgttagttgg |
209 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| ||||||| | ||||||||||||||| |
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| T |
37899662 |
tcaaccttgaaaagaacttgcttttcaataagcacattaaaatcaggaggataatcattggtgccttctccctgttgaaaaatcagaagatgttagttga |
37899761 |
T |
|
| Q |
210 |
aaattcattgc---------aaaaataaacctcgtttatagaccatgcatttatccactaccttgtcatgttcattgatcaggtcttgcacattacgccc |
300 |
Q |
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|||||| |||| ||||| ||||||| | ||||||||||||| |||||||||||||| |||||||||||||| | ||| |||||||||||||| |
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| T |
37899762 |
aaattccttgcataaaaaaaaaaaaaaaacctcatatatagaccatgcaattatccactaccttctcatgttcattgattaagtcctgcacattacgccc |
37899861 |
T |
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| Q |
301 |
aataaaccgtgtcacctggcgatcaaaaagaacaaaggtagcggaccctgtatcgtccatcacaatgacatgcagcttgaacctaacaaataat |
394 |
Q |
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| T |
37899862 |
aataaattgcgtcacttggcgatcaaaaagaacaaaagtagttgaccctgtatcgtccatcacaatgacatgcagcttgaacctaacaaataat |
37899955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 394
Target Start/End: Complemental strand, 18209219 - 18208813
Alignment:
| Q |
10 |
attatacttagatatgaattgttcgatgacaccaacatcgtcagatgccttcttaacgatataattcctatacttcttcacgacatttccttcaccaacc |
109 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
18209219 |
attatacttagacatgaactgttcgatgacaccaacatcgtcagatgccttcttaacggcataattcctatacttcttcacgacatttccttcatcaacc |
18209120 |
T |
|
| Q |
110 |
tcaaccttgaaaagaacttgcttgtcaataagcacattaaaatcaggaggataatcacaggctccttctccctattgaaaatttagaagatgttagttgg |
209 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||| ||||||| | ||||||||||||||| |
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| T |
18209119 |
tcaaccttgaaaagaacttgcttttcaataagcacattaaaatcaggaggataatcattggtgccttctccctgttgaaaaatcagaagatgttagttga |
18209020 |
T |
|
| Q |
210 |
aaattcattgc----------------------aaaaataaacctcgtttatagaccatgcatttatccactaccttgtcatgttcattgatcaggtctt |
287 |
Q |
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|||||| |||| ||||| ||||||| | |||||| |||||| |||||||||||||| |||||||||||||| | ||| | |
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| T |
18209019 |
aaattccttgcataaaaaaaaaaaaaaaaaaaaaaaaaaaaacctcatatatagatcatgcaattatccactaccttctcatgttcattgattaagtcct |
18208920 |
T |
|
| Q |
288 |
gcacattacgcccaataaaccgtgtcacctggcgatcaaaaagaacaaaggtagcggaccctgtatcgtccatcacaatgacatgcagcttgaacctaac |
387 |
Q |
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||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18208919 |
gcacattacgcccaataaattgcgtcacttggcgatcaaaaagaacaaaagtagcggaccctgtatcgtccatcacaatgacatgcagcttgaacctaac |
18208820 |
T |
|
| Q |
388 |
aaataat |
394 |
Q |
| |
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||||||| |
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| T |
18208819 |
aaataat |
18208813 |
T |
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