View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20402_high_9 (Length: 343)

Name: NF20402_high_9
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20402_high_9
NF20402_high_9
[»] chr3 (9 HSPs)
chr3 (16-199)||(30458475-30458673)
chr3 (16-118)||(30074756-30074858)
chr3 (16-91)||(30069502-30069577)
chr3 (16-91)||(30050240-30050315)
chr3 (16-75)||(30086881-30086940)
chr3 (233-269)||(30458405-30458441)
chr3 (16-63)||(30056696-30056743)
chr3 (37-89)||(30174150-30174202)
chr3 (16-54)||(30082117-30082155)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 30458673 - 30458475
Alignment:
Q  16 aattgtcttattaaattcaaaagcgagggacacgaggttaatttaataaccattcccactacattacacaagctgatgtgattgttaacgacttctatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  30458673 aattgtcttattaaattcaaaagcgagggacacgaggttaatttaataaccattcccaccacgttacacaagctgatgtgattgttaacgacttctatat 30458574  T
Q  116 ggtccctcccccctctgaaaagaaaaaacttccatatatgcttat---------------aggatcgactactactacaataactcgtgatttaacttc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||    
T  30458573 ggtccctcccccctctgaaaagaaaaaacttccatatatgcttatctattattctgtacaaggatcgactactactacaataactcgtgatttaacttc 30458475  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 30074756 - 30074858
Alignment:
Q  16 aattgtcttattaaattcaaaagcgagggacacgaggttaatttaataaccattcccactacattacacaagctgatgtgattgttaacgacttctatat 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |||||||||| ||||| |||    
T  30074756 aattgtcttattaaattcagaagcgagggacacgaggttaatttaataaccattcccactgcattacacaagcagaggtaattgttaacggcttctgtat 30074855  T
Q  116 ggt 118  Q
    |||    
T  30074856 ggt 30074858  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 30069502 - 30069577
Alignment:
Q  16 aattgtcttattaaattcaaaagcgagggacacgaggttaatttaataaccattcccactacattacacaagctga 91  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||    
T  30069502 aattgtcttattaaattcaacagcgagggacacgaggttaatttaataagcattcccactaaaatacacaagctga 30069577  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 30050240 - 30050315
Alignment:
Q  16 aattgtcttattaaattcaaaagcgagggacacgaggttaatttaataaccattcccactacattacacaagctga 91  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||    
T  30050240 aattgttttattaaattcaacagcgagggacacgaggttaatttaataagcattcccactaaaatacacaagctga 30050315  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 30086881 - 30086940
Alignment:
Q  16 aattgtcttattaaattcaaaagcgagggacacgaggttaatttaataaccattcccact 75  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30086881 aattgtcttattaaattcagaagcgagggacacgaggttaatttaataaccattcccact 30086940  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 30458441 - 30458405
Alignment:
Q  233 cattatagacatataaagattggcgacttgacatcaa 269  Q
    |||||||||||||||||||||||||||||||||||||    
T  30458441 cattatagacatataaagattggcgacttgacatcaa 30458405  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 30056696 - 30056743
Alignment:
Q  16 aattgtcttattaaattcaaaagcgagggacacgaggttaatttaata 63  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  30056696 aattgtcctattaaattcaaaagtgagggacacgaagttaatttaata 30056743  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 30174150 - 30174202
Alignment:
Q  37 agcgagggacacgaggttaatttaataaccattcccactacattacacaagct 89  Q
    ||||||||||||||||||||||||||||| ||| |||||| | | ||||||||    
T  30174150 agcgagggacacgaggttaatttaataactatttccactaaaattcacaagct 30174202  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 30082117 - 30082155
Alignment:
Q  16 aattgtcttattaaattcaaaagcgagggacacgaggtt 54  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  30082117 aattgtcttattatattcagaagcgagggacacgaggtt 30082155  T

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