View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_low_20 (Length: 252)
Name: NF20402_low_20
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 43646300 - 43646073
Alignment:
| Q |
13 |
cagagagaatggcttgtttcagagcttgtaatgctatgtaagcattttggatgcggttgttttcaaagacaagagatgggttgtctatggtttgggctga |
112 |
Q |
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| T |
43646300 |
cagagagaatggcttgtttcaaagcttgtaatgctatgtaagcattttggatgcggttgttttcaaagacaagagatgggttgtctatggtttgggctga |
43646201 |
T |
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| Q |
113 |
gagggagagtgtgtttatggttagaagcagtgtaactatgaggagtgtttgtgtttgtgtttgtgatttcttcatcatcgtgttaataaaccaaatgggg |
212 |
Q |
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| T |
43646200 |
gagggagagtgtgtttatggttagaagcagtgtaactatgaggagtgtt------------tgtgatttcttcatcatcgtgttaataaaccaaatgggg |
43646113 |
T |
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| Q |
213 |
taattaatttcttcaactttgcatttcttttatggaatgt |
252 |
Q |
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| T |
43646112 |
taattaatttcttcaactttgcatttcttttatggaatgt |
43646073 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 32271704 - 32271764
Alignment:
| Q |
13 |
cagagagaatggcttgtttcagagcttgtaatgctatgtaagcattttggatgcggttgtt |
73 |
Q |
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| T |
32271704 |
cagaaagaatagcttgtttaaaagcttgtaatgccacgtaagcgtttttgatgcggttgtt |
32271764 |
T |
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