View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_low_21 (Length: 252)
Name: NF20402_low_21
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_low_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 12916981 - 12917226
Alignment:
| Q |
8 |
atattattctatgaaaatctggaacttgttgaaatgacatgatgttagtgagtgagtattgggctaaggttttaagaagtgaggttaagagttaaagatt |
107 |
Q |
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| T |
12916981 |
atattattctatgaaaatctggaacttgttgaaatgacatgatgttagtgagtgagtattgggctaaggttttaagaagtgaggttaagagttaaagatt |
12917080 |
T |
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| Q |
108 |
ttgaatgtgaggtttttgtctctgaagtctcaag-gggtattaatttagtgacatagaaatcaagtgaagtgtgaatgttattatgttatgttatttatt |
206 |
Q |
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| T |
12917081 |
ttgaatgtgaggtttttgtctctgaagtctcaagtgggtattaatttagtgacatagaaatcaagtgaagtgtgaatgttattatgttatgttatttatt |
12917180 |
T |
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| Q |
207 |
agtttaagaatgatggattggtcgtgtagtgtcttttcattttaat |
252 |
Q |
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| T |
12917181 |
agtttaagaatgatgaattggtcgtgtagtgtcttttcattttaat |
12917226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 12940406 - 12940166
Alignment:
| Q |
8 |
atattattctatgaaaatctggaacttgttgaaatgacatgatgttagtgagtgagtattgggctaaggttttaagaagtgaggttaagagttaaagatt |
107 |
Q |
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| T |
12940406 |
atattattctatgtaaatctggaacttgttgaaatgacatgatgttagtgagtgagtattgggctaaggttttaagaagtgaggttaagagttaaagatt |
12940307 |
T |
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| Q |
108 |
ttgaatgtgaggtttttgtctctgaagtctcaag-gggtattaatttagtgacatagaaatcaagtgaagtgtgaatgttattatgttatgttatttatt |
206 |
Q |
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| T |
12940306 |
ttgaatgtgaggtttttgtctctgaagtctcaagtgggtattaatttagtgacatagaaatcaagtgaagtgtgaatgttattatgttct-----ttatt |
12940212 |
T |
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| Q |
207 |
agtttaagaatgatggattggtcgtgtagtgtcttttcattttaat |
252 |
Q |
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| T |
12940211 |
agtttaagaatgatggattggtcgtgtagtgtcttttcattttaat |
12940166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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