View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_low_24 (Length: 248)
Name: NF20402_low_24
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 51921125 - 51920914
Alignment:
| Q |
19 |
actacttattctctcattcattcatacttcaagcaggtcatataaaaaa-cttgatttaaaattagattnnnnnnnctagtttggtttgtttgacttgaa |
117 |
Q |
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| T |
51921125 |
actacttattctctcattcattcatacttcaagcatgtcatataaaaaaacttgatttaaaattagattaaaaaa-ctagtttggtttgtttgacttgaa |
51921027 |
T |
|
| Q |
118 |
taaaatgaatagttagtaaaatgagaaaattaacgtctaatattttaatcagacatgatttgttatacatgtgcatataatattaactattgatttattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51921026 |
taaaatgaatagttagtaaaatgagaaaattaacgtctaatattttaatcagacataatttgttatacatgtgcatataatattaactattgatttattt |
51920927 |
T |
|
| Q |
218 |
tatatcaatggta |
230 |
Q |
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||||||||||||| |
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| T |
51920926 |
tatatcaatggta |
51920914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 15252273 - 15252194
Alignment:
| Q |
130 |
ttagtaaaatgagaaaattaacgtctaatattttaatcagacatgatttgttatacatgtgcatataatattaactattga |
210 |
Q |
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| T |
15252273 |
ttagtacagtgagaaaatcaacgt-tgatattttaatcacccacgatttgttatgcatgtccatataatatcaactattga |
15252194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 11322618 - 11322666
Alignment:
| Q |
19 |
actacttattctctcattcattcatacttcaagcaggtcatataaaaaa |
67 |
Q |
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| T |
11322618 |
actatttattctctcattcattcatacttgaagcaagtcatataaaaaa |
11322666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 26979512 - 26979584
Alignment:
| Q |
141 |
agaaaattaacgtctaatattttaatcagacatgatttgttatacatgtgcatataatattaactattgattt |
213 |
Q |
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|||||||||| | || ||||| |||||| ||||||||||||| ||||| |||||||||| ||| |||||||| |
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| T |
26979512 |
agaaaattaaaggctgatattgtaatcattcatgatttgttatgcatgtacatataatatcaaccattgattt |
26979584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 35257333 - 35257372
Alignment:
| Q |
174 |
gatttgttatacatgtgcatataatattaactattgattt |
213 |
Q |
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| T |
35257333 |
gatttgttatgcatgtgcatataatatcaactattgattt |
35257372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 5202793 - 5202831
Alignment:
| Q |
175 |
atttgttatacatgtgcatataatattaactattgattt |
213 |
Q |
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| T |
5202793 |
atttgttatacatgtgcatataatatgatctattgattt |
5202831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 1550449 - 1550495
Alignment:
| Q |
173 |
tgatttgttatacatgtgcatataatattaactattgatttatttta |
219 |
Q |
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| T |
1550449 |
tgatttgttatgcatgtgcatataatatcaaccattgatttctttta |
1550495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 17072988 - 17073060
Alignment:
| Q |
128 |
agttagtaaaatgagaaaattaacgtctaatattttaatcagacatgatttgttatacatgtgcatataatat |
200 |
Q |
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|||||||||||||||||||||| | | || |||||||| ||||||| ||||||||||||||||||||| |
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| T |
17072988 |
agttagtaaaatgagaaaattatgggttgatgttttaatcgtccatgattaattatacatgtgcatataatat |
17073060 |
T |
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