View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_low_26 (Length: 245)
Name: NF20402_low_26
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_low_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 51921366 - 51921138
Alignment:
| Q |
17 |
cattatttcttttatgtttcttgcatctttgtagcatgatgagctaagtagtaatttcttcnnnnnnnnnnnncctaagaagtaataaaatggttcatgt |
116 |
Q |
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| T |
51921366 |
cattatttcttttatgtttcttgcatctttgtagcatgatgagctaagtagtaatttcttcaaaaaagaaaaacctaagaagtaataaaatggttcatgt |
51921267 |
T |
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| Q |
117 |
aagggtttttattttaggtgtgcttaaaaacagtaagttttaggttgaatgtcgaagtgttatttatatccaagtatcatctcaaaaaactatttcgctc |
216 |
Q |
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| T |
51921266 |
aagggtttttattttaggtgtgcttaaaaacagtaaattttaggttgaatgtcgaagtgttatttatatccaagtgtcatctcaaaaaactctttcactc |
51921167 |
T |
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| Q |
217 |
tttattaaaaaactctcaagtcatatgtt |
245 |
Q |
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| T |
51921166 |
tttcttaaaaaactctcaagtcatatgtt |
51921138 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 11322553 - 11322603
Alignment:
| Q |
193 |
tcatctcaaaaaactatttcgctctttattaaaaaactctcaagtcatatg |
243 |
Q |
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| T |
11322553 |
tcatctcaaaaaactccttccctctttcttaagaaactctcaagtcatatg |
11322603 |
T |
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