View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20402_low_28 (Length: 243)

Name: NF20402_low_28
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20402_low_28
NF20402_low_28
[»] chr4 (2 HSPs)
chr4 (64-240)||(43288299-43288476)
chr4 (29-85)||(44643596-44643652)
[»] chr1 (6 HSPs)
chr1 (29-88)||(12141569-12141628)
chr1 (29-85)||(1953812-1953868)
chr1 (29-73)||(26310463-26310507)
chr1 (28-85)||(4242485-4242542)
chr1 (29-85)||(51465629-51465683)
chr1 (37-85)||(47580540-47580588)
[»] chr8 (5 HSPs)
chr8 (29-85)||(31183840-31183896)
chr8 (29-85)||(39655614-39655670)
chr8 (30-77)||(21347255-21347302)
chr8 (49-78)||(17028506-17028535)
chr8 (49-78)||(17558942-17558971)
[»] chr3 (1 HSPs)
chr3 (29-85)||(11634084-11634140)
[»] chr6 (2 HSPs)
chr6 (29-70)||(6591767-6591808)
chr6 (29-75)||(19976203-19976249)
[»] chr2 (1 HSPs)
chr2 (48-85)||(14433535-14433572)
[»] chr7 (1 HSPs)
chr7 (29-85)||(39426369-39426424)
[»] chr5 (2 HSPs)
chr5 (49-85)||(26702954-26702990)
chr5 (49-85)||(26972687-26972723)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 43288476 - 43288299
Alignment:
Q  64 cacaaatcaaattagaagaaacatggagattgataatcttctgtcccttgtgtattgctcaaagcaatatatatgttggcttatttagtagaaccagagt 163  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43288476 cacaaatcaaattagaagaaacatgcagattgataatcttctgtcccttgtgtattgctcaaagcaatatatatgttggcttatttagtagaaccagagt 43288377  T
Q  164 tgccactcct-agtgagtttaaagcagttaatttttacgcctttaattttctattggtctttgtacccttttgcctat 240  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  43288376 tgccactcatcagtgagtttaaagcagttaatttttacgcctttaatttgctattggcctttgtacccttttgcctat 43288299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 44643652 - 44643596
Alignment:
Q  29 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  44643652 gaatttggttgccgacaaagctccatcaaaatcttcacaaatcaaattagaagaaac 44643596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 12141569 - 12141628
Alignment:
Q  29 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaacatg 88  Q
    |||||||||||| |||||| || |||||||||||||||||||||||||| ||||||||||    
T  12141569 gaatttggttgccgacacatcttcatcaaaatcttcacaaatcaaattaaaagaaacatg 12141628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 1953868 - 1953812
Alignment:
Q  29 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    |||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||    
T  1953868 gaatttggttgccgacacagccccatcaaaatcttcacaaatcaaagtagaggaaac 1953812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 26310507 - 26310463
Alignment:
Q  29 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaa 73  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||    
T  26310507 gaatttggttgttgacacagctccatcaaaatcgtcacaaatcaa 26310463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 4242485 - 4242542
Alignment:
Q  28 tgaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    ||||||||||||  |||||| |||||||||||||||| ||||||||||| || |||||    
T  4242485 tgaatttggttgtcgacacaactccatcaaaatcttcgcaaatcaaattggaggaaac 4242542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 51465683 - 51465629
Alignment:
Q  29 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||| |||| |||||    
T  51465683 gaatttggttgccgacacagctccatc--aatcttcacaaatcaaagtagaggaaac 51465629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 47580588 - 47580540
Alignment:
Q  37 ttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    |||| |||||||||||||| ||||||| |||||||||| |||| |||||    
T  47580588 ttgccgacacagctccatcgaaatcttaacaaatcaaagtagaggaaac 47580540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 31183896 - 31183840
Alignment:
Q  29 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    |||||||||||  |||||||||||||||||||||||| ||||||| |||||||||||    
T  31183896 gaatttggttgtagacacagctccatcaaaatcttcataaatcaacttagaagaaac 31183840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 39655614 - 39655670
Alignment:
Q  29 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||    
T  39655614 gaatttgattgccgacacagctccatcaaaatcttcacaaatcaaattggaggaaac 39655670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 21347302 - 21347255
Alignment:
Q  30 aatttggttgctgacacagctccatcaaaatcttcacaaatcaaatta 77  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||    
T  21347302 aatttggttgtcgacacagctctatcaaaatcttcacaaatcaaatta 21347255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 17028535 - 17028506
Alignment:
Q  49 ctccatcaaaatcttcacaaatcaaattag 78  Q
    ||||||||||||||||||||||||||||||    
T  17028535 ctccatcaaaatcttcacaaatcaaattag 17028506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Complemental strand, 17558971 - 17558942
Alignment:
Q  49 ctccatcaaaatcttcacaaatcaaattag 78  Q
    ||||||||||||||||||||||||||||||    
T  17558971 ctccatcaaaatcttcacaaatcaaattag 17558942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 11634084 - 11634140
Alignment:
Q  29 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    ||||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  11634084 gaatttgattgcagacacagcttcatcaaaatcttcacaaatcaaattagaggaaac 11634140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 6591767 - 6591808
Alignment:
Q  29 gaatttggttgctgacacagctccatcaaaatcttcacaaat 70  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  6591767 gaatttggttgccgacacagctccatcaaaatcttcacaaat 6591808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 19976249 - 19976203
Alignment:
Q  29 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaat 75  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||||    
T  19976249 gaattttgttgccgacaaaactccatcaaaatcttcacaaatcaaat 19976203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 14433535 - 14433572
Alignment:
Q  48 gctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  14433535 gctccatcaaaatcttcacaaattaaattagaagaaac 14433572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 39426369 - 39426424
Alignment:
Q  29 gaatttggttgctgacacagctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    |||||||||||| |||||| | |||||||||| ||||||||||||| |||| |||||    
T  39426369 gaatttggttgcggacacaac-ccatcaaaattttcacaaatcaaagtagaggaaac 39426424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 26702954 - 26702990
Alignment:
Q  49 ctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  26702954 ctccatcaaaaccttcacaaatcaaattagaggaaac 26702990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 26972687 - 26972723
Alignment:
Q  49 ctccatcaaaatcttcacaaatcaaattagaagaaac 85  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  26972687 ctccatcaaaaccttcacaaatcaaattagaggaaac 26972723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University