View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20402_low_29 (Length: 237)

Name: NF20402_low_29
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20402_low_29
NF20402_low_29
[»] chr4 (10 HSPs)
chr4 (1-150)||(10264170-10264319)
chr4 (1-143)||(24082272-24082414)
chr4 (1-147)||(26929101-26929247)
chr4 (1-143)||(51447727-51447869)
chr4 (1-149)||(43327644-43327792)
chr4 (1-147)||(21560139-21560285)
chr4 (1-150)||(19586878-19587028)
chr4 (8-149)||(15516756-15516898)
chr4 (42-149)||(744550-744658)
chr4 (42-147)||(8555429-8555535)
[»] chr7 (8 HSPs)
chr7 (1-149)||(29486214-29486362)
chr7 (1-149)||(19161269-19161417)
chr7 (1-149)||(20760668-20760816)
chr7 (1-147)||(19038507-19038653)
chr7 (1-147)||(20715983-20716129)
chr7 (1-149)||(33234813-33234961)
chr7 (1-149)||(34286909-34287057)
chr7 (42-149)||(6915600-6915708)
[»] chr6 (6 HSPs)
chr6 (1-149)||(12584604-12584752)
chr6 (1-149)||(12029653-12029801)
chr6 (1-147)||(245173-245319)
chr6 (1-149)||(33975004-33975152)
chr6 (104-149)||(33803612-33803657)
chr6 (42-149)||(13460971-13461079)
[»] chr8 (8 HSPs)
chr8 (1-151)||(20667764-20667914)
chr8 (1-149)||(30553101-30553249)
chr8 (1-147)||(44217885-44218031)
chr8 (149-221)||(42433038-42433110)
chr8 (42-149)||(44936214-44936322)
chr8 (42-149)||(23970628-23970736)
chr8 (42-149)||(37026292-37026400)
chr8 (42-139)||(6304718-6304815)
[»] chr3 (7 HSPs)
chr3 (1-149)||(44077576-44077724)
chr3 (1-149)||(914035-914182)
chr3 (42-149)||(39800728-39800836)
chr3 (7-138)||(2847279-2847409)
chr3 (12-93)||(23190174-23190255)
chr3 (42-149)||(5255895-5256003)
chr3 (105-141)||(43947472-43947508)
[»] chr2 (9 HSPs)
chr2 (1-149)||(11871063-11871210)
chr2 (1-149)||(35362458-35362604)
chr2 (1-143)||(3706197-3706339)
chr2 (42-149)||(1997179-1997287)
chr2 (12-83)||(45208529-45208600)
chr2 (8-149)||(6346939-6347081)
chr2 (1-75)||(11445787-11445860)
chr2 (42-149)||(14327450-14327558)
chr2 (42-139)||(28498265-28498362)
[»] chr5 (4 HSPs)
chr5 (1-149)||(37459647-37459793)
chr5 (1-140)||(9673417-9673555)
chr5 (42-149)||(19391331-19391439)
chr5 (42-149)||(31299262-31299370)
[»] scaffold0283 (1 HSPs)
scaffold0283 (42-149)||(7554-7662)
[»] chr1 (4 HSPs)
chr1 (42-149)||(50399207-50399315)
chr1 (42-149)||(18107620-18107728)
chr1 (89-138)||(28570406-28570455)
chr1 (70-149)||(43258829-43258909)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 10264170 - 10264319
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10264170 aaaattggtgaggggcaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 10264269  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatatagac 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10264270 ggacaaaatgggaatttcatatggcatcaattttaatagagtatatagac 10264319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 24082272 - 24082414
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24082272 aaaattggtgaggggcaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 24082371  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagta 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  24082372 ggacaaaatgggaatttcatatggcatcaattttaatagagta 24082414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 26929101 - 26929247
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26929101 aaaattggtgaggggtaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 26929200  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26929201 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 26929247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 51447869 - 51447727
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51447869 aaaattggtgaggggcaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 51447770  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagta 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  51447769 ggacaaaatgggaatttcatatggcatcaattttaatagagta 51447727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 43327792 - 43327644
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43327792 aaaattggtgaggggtaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 43327693  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43327692 ggacaaaatggtaatttcatatggcatcaattttaatagagtatataga 43327644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 21560285 - 21560139
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21560285 aaaattggtgaggggcaaaatgggaaatttagcataaaaaagatgaggtggcaccaaaccaaacccatcaattagaaaattacttaaatgcccattccag 21560186  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21560185 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 21560139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 19587028 - 19586878
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaa-ttacttaaatgcccattcca 99  Q
    ||||||||||||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||| | |||||| |||| |||| ||||||||||| |||    
T  19587028 aaaattggtgaggggcaaattgaaaaatatggcataaaaaaggtgaggtggcaacaaaccaaacctatcaattaaaaaaattacctaaatgcccatccca 19586929  T
Q  100 gggacaaaatgggaatttcatatggcatcaattttaatagagtatatagac 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19586928 gggacaaaatgggaatttcatatggcatcaattttaatagagtatatagac 19586878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 15516898 - 15516756
Alignment:
Q  8 gtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaa 107  Q
    |||||||||||||||||||||    | | | || |||||||||||| |||  |||  |||||||||||||||||||| |||| ||  | | |||| ||||    
T  15516898 gtgaggggcaaaatgggaaatgcacccttataatggtgaggtggcaacaacacaattccaccaattagaaaattactaaaatacctttcctaggggcaaa 15516799  T
Q  108 atgggaatttcatatggcatcaattttaatag-agtatataga 149  Q
    ||||||| || ||| |||||||| |||||||| ||||||||||    
T  15516798 atgggaaatttatagggcatcaactttaatagtagtatataga 15516756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 744550 - 744658
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | |||| ||||||||||| || ||| |||||||| |||||||| |    
T  744550 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctaggggcaaaatgggaaatttatagggcatcaactttaatagta 744649  T
Q  141 gtatataga 149  Q
    |||||||||    
T  744650 gtatataga 744658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 8555429 - 8555535
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||| ||||||||  |||| ||| | | |||||||||||||||| || ||| |||||||| |||||||| |    
T  8555429 ggtgaggtggcaacaacacaattccaccaattaaaaaattacaaaaatacccctcctagggacaaaatgggaaatttatagggcatcaactttaatagta 8555528  T
Q  141 gtatata 147  Q
    |||||||    
T  8555529 gtatata 8555535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 29486362 - 29486214
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29486362 aaaattggtgaggggcaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 29486263  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29486262 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 29486214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 19161417 - 19161269
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19161417 aaaattggtgaggggtaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 19161318  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19161317 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 19161269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 20760816 - 20760668
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20760816 aaaattggtgaggggtaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 20760717  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20760716 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 20760668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 19038507 - 19038653
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19038507 aaaattgttgaggggcaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 19038606  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  19038607 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 19038653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 20716129 - 20715983
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20716129 aaaattgttgaggggcaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 20716030  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20716029 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 20715983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 33234813 - 33234961
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33234813 aaaattgatgaggggcaaaatgggaaatctggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaatattacttaaatgcccattccag 33234912  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33234913 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 33234961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 34286909 - 34287057
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  34286909 aaaattggtgaggggcaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaacaaacccaccaattagaaaattacttaaatgcccattctag 34287008  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34287009 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 34287057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 6915600 - 6915708
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | |||| ||||||||||| || ||| |||||||| |||||||| |    
T  6915600 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctaggggcaaaatgggaaatttatagggcatcaactttaatagta 6915699  T
Q  141 gtatataga 149  Q
    |||||||||    
T  6915700 gtatataga 6915708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 12584604 - 12584752
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12584604 aaaattggtgaggggcaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 12584703  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12584704 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 12584752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 12029801 - 12029653
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12029801 aaaattggtgaggggcaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccatcaattagaaaattacttaaatgcccattccag 12029702  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12029701 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 12029653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 245319 - 245173
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  245319 aaaattggtgaggggcaaaataggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccatcaattagaaaattacttaaatgcccattccag 245220  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  245219 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 245173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 33975152 - 33975004
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| | |||||| |||||||| ||||||||||| ||||    
T  33975152 aaaattggtgaggggcaaaatggaaaatatggcataaaaaaggtgaggtggcaacaaaccaaacctatcaattaaaaaattacctaaatgcccatcccag 33975053  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33975052 ggataaaatgggaatttcatatggcatcaattttaatagagtatataga 33975004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 33803612 - 33803657
Alignment:
Q  104 caaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33803612 caaaatgggaatttcatatggcatcaattttaatagagtatataga 33803657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 13460971 - 13461079
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | |||| ||||||||||| || ||| |||||||| |||||||| |    
T  13460971 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctaggggcaaaatgggaaatttatagggcatcaactttaatagta 13461070  T
Q  141 gtatataga 149  Q
    |||||||||    
T  13461071 gtatataga 13461079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 20667764 - 20667914
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20667764 aaaattggtgaggggcaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 20667863  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatatagacg 151  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20667864 ggataaaatgggaatttcatatggcatcaattttaatagagtatatagacg 20667914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 30553101 - 30553249
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30553101 aaaattggtgaggggtaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 30553200  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30553201 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 30553249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 44217885 - 44218031
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44217885 aaaattggtgaggggtaaaatgggaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 44217984  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44217985 ggacaaaatgggaatttcatatggcatcaattttaatagagtatata 44218031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 42433110 - 42433038
Alignment:
Q  149 acgtgttaaaaatcggttgtttcccataaacatgactgaaatcatcattcaatctaagttagctatttgttta 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42433110 acgtgttaaaaatcggttgtttcccataaacatgactgaaatcatcattcaatctaagttagctatttgttta 42433038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 44936322 - 44936214
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | |||||||||||||||| || ||| |||||||| |||||||| |    
T  44936322 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctagggacaaaatgggaaatttatagggcatcaactttaatagta 44936223  T
Q  141 gtatataga 149  Q
    |||||||||    
T  44936222 gtatataga 44936214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 23970628 - 23970736
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||| |||| ||| | | |||| ||||||||||| || ||| | |||||| |||||||| |    
T  23970628 ggtgaggtggcaacaacacaattccaccaattagaaaattactaaaatacccctcctaggggcaaaatgggaaatttataggacatcaactttaatagta 23970727  T
Q  141 gtatataga 149  Q
    |||||||||    
T  23970728 gtatataga 23970736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 37026400 - 37026292
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | |||| ||||||||||| || ||| |||||||| |||||||| |    
T  37026400 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccttcctaggggcaaaatgggaaatttatagggcatcaactttaatagta 37026301  T
Q  141 gtatataga 149  Q
    |||||||||    
T  37026300 gtatataga 37026292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 6304718 - 6304815
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag 139  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | |||| ||||||||||| || |||  ||||||| ||||||||    
T  6304718 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctaggggcaaaatgggaaatttatagagcatcaactttaatag 6304815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 44077576 - 44077724
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||     
T  44077576 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccactaattagaaaattacttaaatacccattccaa 44077675  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44077676 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 44077724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 914182 - 914035
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  914182 aaaattgatgaagggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 914083  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  914082 ggacaaaatgggaatttcatat-gcatcaattttaatagagtatataga 914035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 39800728 - 39800836
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | |||| ||||||||||| || ||| |||||||| |||||||| |    
T  39800728 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctaggggcaaaatgggaaatttatagggcatcaactttaatagta 39800827  T
Q  141 gtatataga 149  Q
    |||||||||    
T  39800828 gtatataga 39800836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 2847279 - 2847409
Alignment:
Q  7 ggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaa 106  Q
    |||||||||||||||||||| | || |||||||| |||| ||| ||| | ||||||| || | |||||| |||||||  || ||||| |   |||| |||    
T  2847279 ggtgaggggcaaaatgggaattatgacataaaaatggtgtggtagca-ctaaccaaaaccgctaattagtaaattaccaaattgcccctcttaggggcaa 2847377  T
Q  107 aatgggaatttcatatggcatcaattttaata 138  Q
    ||||| || |||||||||||| ||||||||||    
T  2847378 aatggaaaattcatatggcattaattttaata 2847409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 23190255 - 23190174
Alignment:
Q  12 ggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgccc 93  Q
    |||| |||||||||||| || |||||||| | ||||||||||||||   || |||||||||||| |||||||  ||||||||    
T  23190255 ggggaaaaatgggaaatatgccataaaaatgatgaggtggcaccaacaaaatcccaccaattagtaaattacaaaaatgccc 23190174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 5255895 - 5256003
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||  | | |||| ||||||||||| || ||| |||||||| |||||||| |    
T  5255895 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacctttcctaggggcaaaatgggaaatttatagggcatcaactttaatagta 5255994  T
Q  141 gtatataga 149  Q
    |||||||||    
T  5255995 gtatataga 5256003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 43947508 - 43947472
Alignment:
Q  105 aaaatgggaatttcatatggcatcaattttaatagag 141  Q
    |||||||||| ||||||||||||||||||||||||||    
T  43947508 aaaatgggaaattcatatggcatcaattttaatagag 43947472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 11871063 - 11871210
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11871063 aaaattggtgaggggcaaaatgggaaatttggcataaaaa-gatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 11871161  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11871162 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 11871210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 35362458 - 35362604
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35362458 aaaattggtgaggggcaaaatgggaaatttggcataaaaaagatgaggtggcaacaaaccaaacccaccaattagaaaattacttaaatgcccattccag 35362557  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  35362558 ggacaaaatgggaatttcatatggcatcaatttta--agagtatataga 35362604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 3706339 - 3706197
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3706339 aaaattggtgaggggaaaaatagaaaatttggcataaaaaagatgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 3706240  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagta 143  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  3706239 ggacaaaatgggaatttcatatggtatcaattttaatagagta 3706197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 1997179 - 1997287
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | |||| ||||||||||| || ||| |||||||| |||||||| |    
T  1997179 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctaggggcaaaatgggaaatttatagggcatcaactttaatagta 1997278  T
Q  141 gtatataga 149  Q
    |||||||||    
T  1997279 gtatataga 1997287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 45208529 - 45208600
Alignment:
Q  12 ggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattac 83  Q
    ||||||||||||||||| || |||||||| | ||||||||||||||   || |||||||||||| |||||||    
T  45208529 ggggcaaaatgggaaatatgtcataaaaatgatgaggtggcaccaacaaaaccccaccaattagtaaattac 45208600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 6346939 - 6347081
Alignment:
Q  8 gtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaa 107  Q
    ||||||||||||||||||||| |  |   | || |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | |||| ||||    
T  6346939 gtgaggggcaaaatgggaaatgtacccatataatggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctaggggcaaa 6347038  T
Q  108 atgggaatttcatatggcatcaattttaatag-agtatataga 149  Q
    ||||||| || |||  ||||||| |||||||| ||||||||||    
T  6347039 atgggaaatttatagagcatcaactttaatagtagtatataga 6347081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 11445860 - 11445787
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattag 75  Q
    |||||||||| ||||||||||||||||| || |||||||| | |||||||||||||| |  | ||||||||||||    
T  11445860 aaaattggtg-ggggcaaaatgggaaatatgccataaaaatgatgaggtggcaccaaccacatcccaccaattag 11445787  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 14327450 - 14327558
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||| ||||||||  |||| || || | |||| ||||||||||| || ||| |||||||| |||||||| |    
T  14327450 ggtgaggtggcaacaacacaattccaccaattaaaaaattacaaaaataccaatcctaggggcaaaatgggaaatttatagggcatcaactttaatagta 14327549  T
Q  141 gtatataga 149  Q
    |||||||||    
T  14327550 gtatataga 14327558  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 28498362 - 28498265
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag 139  Q
    |||||||||||| |||  |||  |||||||||| ||||||||  |||| ||| | | |||| ||||||||||| || ||| |||||||| ||||||||    
T  28498362 ggtgaggtggcaacaacacaattccaccaattaaaaaattacaaaaatacccctcctaggggcaaaatgggaaatttatagggcatcaactttaatag 28498265  T

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Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 37459793 - 37459647
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37459793 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaacaaaccaaacccaccaattagaaaattacttaaatgcccattccag 37459694  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaatagagtatataga 149  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  37459693 ggacaaaatgggaatttcatatggcatcaatttta--agagtatataga 37459647  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 9673417 - 9673555
Alignment:
Q  1 aaaattggtgaggggcaaaatgggaaatttggcataaaaaaggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccag 100  Q
    ||||||| ||| || ||||||||||||| |||||||||| |||||||| |||| ||| ||||| ||| || |||||||||||| ||||||||| | | ||    
T  9673417 aaaattgatgatggacaaaatgggaaatatggcataaaataggtgagggggcaacaa-ccaaatccatcacttagaaaattacctaaatgcccctcctag 9673515  T
Q  101 ggacaaaatgggaatttcatatggcatcaattttaataga 140  Q
       ||||||||||| |||||||||||||||||||||||||    
T  9673516 aagcaaaatgggaaattcatatggcatcaattttaataga 9673555  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 19391439 - 19391331
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | | || ||||||||||| || ||| |||||||| |||||||| |    
T  19391439 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctaagggcaaaatgggaaatttatagggcatcaactttaatagta 19391340  T
Q  141 gtatataga 149  Q
    |||||||||    
T  19391339 gtatataga 19391331  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 31299262 - 31299370
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | |||| ||||||||||| || ||| | |||||| |||||||| |    
T  31299262 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctaggggcaaaatgggaaatttataggacatcaactttaatagta 31299361  T
Q  141 gtatataga 149  Q
    |||||||||    
T  31299362 gtatataga 31299370  T

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Target: scaffold0283 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 7662 - 7554
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | |||||||||||||||| || ||| |||||||| |||||||| |    
T  7662 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctagggacaaaatgggaaatttatagggcatcaactttaatagta 7563  T
Q  141 gtatataga 149  Q
    |||||||||    
T  7562 gtatataga 7554  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 50399207 - 50399315
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | | |||||||||||||| || ||| |||||||| |||||||| |    
T  50399207 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctaaggacaaaatgggaaatttatagggcatcaactttaatagta 50399306  T
Q  141 gtatataga 149  Q
    |||||||||    
T  50399307 gtatataga 50399315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 18107728 - 18107620
Alignment:
Q  42 ggtgaggtggcaccaaaccaaacccaccaattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-a 140  Q
    |||||||||||| |||  |||  |||||||||||||||||||  |||| ||| | | | || ||||||||||| || ||| |||||||| |||||||| |    
T  18107728 ggtgaggtggcaacaacacaattccaccaattagaaaattacaaaaatacccctcctaagggcaaaatgggaaatttatagggcatcaactttaatagta 18107629  T
Q  141 gtatataga 149  Q
    |||||||||    
T  18107628 gtatataga 18107620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 28570406 - 28570455
Alignment:
Q  89 tgcccattccagggacaaaatgggaatttcatatggcatcaattttaata 138  Q
    ||||| ||| ||||||||||| |||| |||||| ||||||||||||||||    
T  28570406 tgccccttctagggacaaaattggaaattcataaggcatcaattttaata 28570455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 43258829 - 43258909
Alignment:
Q  70 aattagaaaattacttaaatgcccattccagggacaaaatgggaatttcatatggcatcaattttaatag-agtatataga 149  Q
    ||||||||||||||  |||| ||| | | |||| ||||||||||| || ||| |||||||| |||||||| ||||||||||    
T  43258829 aattagaaaattacaaaaatacccctcctaggggcaaaatgggaaatttatagggcatcaactttaatagtagtatataga 43258909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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