View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_low_3 (Length: 491)
Name: NF20402_low_3
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 474
Target Start/End: Original strand, 19251974 - 19252432
Alignment:
| Q |
16 |
atattctcttcaaatctgccccaaaaaggtccatttccatgcttgttttcagattcagctcttccctttttcaacattctcatacaacacaaatctatgg |
115 |
Q |
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| T |
19251974 |
atattctcttcaaatttgccccaaaaaggtccatttccatgcttgttttcagattcagctcttccctttttcaacattctcatacaacacaactctatgg |
19252073 |
T |
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| Q |
116 |
tactaattacaagatagaaaaaccaaaaacaagcatggaaatgggaatttactcaattcaattcaccaagccttaaaactaaaaggaaattattctttaa |
215 |
Q |
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| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19252074 |
tcctaattaaaagacagaaaaaccaaaaacaagcatggaaatgggaatttactcaattcaattcaccaagccttaaaactataaggaaattattctttat |
19252173 |
T |
|
| Q |
216 |
aataaaatacagtatacaaatttggttacaaaagaaaacaaacgtagcatatagtatctaatgattttaaattgtggttgcagctacgttgcaaactttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| |
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| T |
19252174 |
aataaaatacagtatacaaatttggttacaaaagaaaacaaacgtagcatatagtatctaatgattttaaattgcagttgcagtcacattgcaaactttt |
19252273 |
T |
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| Q |
316 |
atattgtagaataatacagagatgggactgaaattataattccgttgcgaagacttcaaaatcctttatgttgcgcctgtgattatggttgtggaccgca |
415 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
19252274 |
atattgtagaataatacggagatgcgactgaaattataattccgttgcgaagacttcaaaatcctttatgttgcgcttgaaattatggttgtggaccgca |
19252373 |
T |
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| Q |
416 |
ctttaaaaccataaacgaagtaaaaataaacctcggtttgtgagcttcgagttgctatc |
474 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19252374 |
ctttaaaaccatgaacgaagtaaaaataaacctcggtttgtgagcttcgagttgctatc |
19252432 |
T |
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