View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20402_low_30 (Length: 234)

Name: NF20402_low_30
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20402_low_30
NF20402_low_30
[»] chr6 (2 HSPs)
chr6 (18-218)||(5438062-5438262)
chr6 (93-207)||(5435583-5435698)
[»] chr2 (2 HSPs)
chr2 (18-206)||(9067809-9068005)
chr2 (107-158)||(44672728-44672778)
[»] chr8 (2 HSPs)
chr8 (18-206)||(12021518-12021696)
chr8 (94-128)||(3160338-3160372)
[»] chr1 (1 HSPs)
chr1 (95-156)||(50694616-50694676)
[»] chr7 (1 HSPs)
chr7 (107-156)||(21090162-21090210)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 5438262 - 5438062
Alignment:
Q  18 tgtagaaggcattccatacctttctatcaaatagttataaggagagtcaactctcttgtaggagctatactgtgcattaggagtctttgactctggttta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5438262 tgtagaaggcattccatacctttctatcaaatagttataaggagagtcaactctcgtgtaggagctatactgtgcattaggagtctttgactctggttta 5438163  T
Q  118 tctccttcatttttctcttttcaccattgtagagctcttaaatcatcacttttcattaaatgaaatacaatttcattctcttgaatttgcagttctttca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  5438162 tctccttcatttttctcttttcaccattgtagagctcttaaatcatcacttttcattaaatgaaatacaatttcgttctcttgaatttgcggttctttca 5438063  T
Q  218 t 218  Q
    |    
T  5438062 t 5438062  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 207
Target Start/End: Complemental strand, 5435698 - 5435583
Alignment:
Q  93 attaggagtctttgactctggtttatctccttcatttttctcttttcaccattgtagagctcttaa-atcatcacttttcattaaatgaaatacaatttc 191  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||  ||||||||||| ||||||| ||||||||||||    
T  5435698 attaggagtctttgactgtggtttatctctttcatttttctgttttcaccattgtaaagctcttaagttcatcactttttattaaataaaatacaatttc 5435599  T
Q  192 attctcttgaatttgc 207  Q
    ||||||||||||||||    
T  5435598 attctcttgaatttgc 5435583  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 9067809 - 9068005
Alignment:
Q  18 tgtagaaggcattccatacctttctatcaaatagttataaggagagtcaactctcttgtaggagctatactgtgcattaggagtctttgactctggttta 117  Q
    ||||||||||||||  ||||||||| |||||||||| | |||||| |||||||||| ||||||||||| || || ||||| |||||||||||||||||||    
T  9067809 tgtagaaggcattcagtacctttctttcaaatagttgttaggagattcaactctctggtaggagctatgctctggattagtagtctttgactctggttta 9067908  T
Q  118 -------tctccttcatttttctcttttcaccattgtagagctcttaa-atcatcacttttcattaaatgaaatacaatttcattctcttgaatttg 206  Q
             |||||    ||||| ||||||||||||||||||||||||  |||||| |||||||||||| |||||||||||||||||| ||||||||    
T  9067909 gacgtttagtcctttcagtttctgttttcaccattgtagagctcttaagctcatcatttttcattaaataaaatacaatttcattctcatgaatttg 9068005  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 44672778 - 44672728
Alignment:
Q  107 actctggtttatctccttcatttttctcttttcaccattgtagagctcttaa 158  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  44672778 actctggtttatctctttcattttt-tgttttcaccattgtagagctcttaa 44672728  T

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Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 12021696 - 12021518
Alignment:
Q  18 tgtagaaggcattccatacctttctatcaaatagttataaggagagtcaactctcttgtaggagctatactgtgcattaggagtctttgactctggttta 117  Q
    ||||||||||||||  || |||||||||||||||| || ||||||||||||||||| ||||||||||| || || ||||||||||||| || ||          
T  12021696 tgtagaaggcattcagtagctttctatcaaatagtaattaggagagtcaactctctggtaggagctatgctctggattaggagtctttaaccct------ 12021603  T
Q  118 tctccttcatttttctcttttcaccattgtagagctcttaaa-tcatcacttttcattaaatgaaatacaatttcattc-tcttgaatttg 206  Q
         |||| ||| || ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| |||||||||||    
T  12021602 -----ttcaattt-ctgttttcaccattgtagagctcttaagctcatcacttttcattaaataaaatacaatttcattcatcttgaatttg 12021518  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 3160338 - 3160372
Alignment:
Q  94 ttaggagtctttgactctggtttatctccttcatt 128  Q
    |||||||||||||||||||||||||||| ||||||    
T  3160338 ttaggagtctttgactctggtttatctctttcatt 3160372  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 50694616 - 50694676
Alignment:
Q  95 taggagtctttgactctggtttatctccttcatttttctcttttcaccattgtagagctctt 156  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||    
T  50694616 taggagtctttgactctggtttatctctttca-ttttctgttttcaccattatagagctctt 50694676  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 21090162 - 21090210
Alignment:
Q  107 actctggtttatctccttcatttttctcttttcaccattgtagagctctt 156  Q
    ||||||||||||||| ||||||||  | ||||||||||||||||||||||    
T  21090162 actctggtttatctctttcatttta-tgttttcaccattgtagagctctt 21090210  T

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