View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_low_4 (Length: 434)
Name: NF20402_low_4
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 25 - 429
Target Start/End: Complemental strand, 3837836 - 3837430
Alignment:
| Q |
25 |
tttagtaccaatgaatctatcattgaagtgtggcaagtgttttatttgttgacttgtaaaaattgtgtaacagcgtgtgttttgttttatataggattct |
124 |
Q |
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| T |
3837836 |
tttagtaccaatgaatctatcattgaagtgtggcaagtgttttacttgttgacttgtaaaaattgtgtaacagcgtgtgttttgttttatataggattct |
3837737 |
T |
|
| Q |
125 |
ttgaatgtaatttaccgcagaagctttgtattgtatagtaaggtatgttctctaattagtttggttaagaaactgct--gtttatcggttgagttaaacg |
222 |
Q |
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| T |
3837736 |
ttgaatgtaatttaccgcagaagctttgaattgtattgtaaggtatgttctctaattagtttggttaagaaactgctatgtttatcggttgagttaaacg |
3837637 |
T |
|
| Q |
223 |
gaattccccttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacaccttttttaaggatctccaagattttgcatca |
322 |
Q |
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| T |
3837636 |
gaattccccttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacaccttttttaaggatctccaagattttgcacca |
3837537 |
T |
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| Q |
323 |
gatcaacaatcaacaaggataaccgagtcttctccttcttccgttacaaaggtaataagacataaaagtttttgttgtttccctttactttgatatcctt |
422 |
Q |
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| T |
3837536 |
gatcaacaatcaacaaggataaccgagtcttctccttcttccgttacaaaggtaataagacataaaaatttatgttctttctcttttctttgctatcctt |
3837437 |
T |
|
| Q |
423 |
tgctact |
429 |
Q |
| |
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| T |
3837436 |
tcctact |
3837430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 201 - 423
Target Start/End: Complemental strand, 3831398 - 3831170
Alignment:
| Q |
201 |
tgtttatcggttgagttaaacggaattccccttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacaccttttttaa |
300 |
Q |
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||||||| ||||||||||||||| || |||||||| |||| || |||||||||||||||| |||| ||||||||||| ||||| ||||||| |||| || |
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| T |
3831398 |
tgtttatgggttgagttaaacggcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaacaccattttcaa |
3831299 |
T |
|
| Q |
301 |
gg--atctccaagatttt-gcatcagatcaacaatca---acaaggataaccgagtcttctccttcttccgttacaaaggtaataagacataaaagtttt |
394 |
Q |
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| T |
3831298 |
gggtatcaagaaaattttggcagaagatgaacaattaatgacatccgtatccgagttttatccttcttttggtaccaaggtaatcagacataaaagttta |
3831199 |
T |
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| Q |
395 |
tgttgtttccctttactttgatatccttt |
423 |
Q |
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| T |
3831198 |
tgttgtttccctttactttgctatccttt |
3831170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 3831651 - 3831536
Alignment:
| Q |
30 |
taccaatgaatctatcattgaagtgtggcaagtgttttatttgttgacttgtaaaaattgtg--taacagcgtgtgttttgttttatataggattctttg |
127 |
Q |
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||||||||||| |||||||||||||||| ||||||| || ||||||||||||||||||| || ||||| |||| | ||||||||||||||| ||| |
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| T |
3831651 |
taccaatgaatgtatcattgaagtgtggaaagtgttgtacttgttgacttgtaaaaattatgcttaacaaagtgtttcctgttttatataggatccttca |
3831552 |
T |
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| Q |
128 |
aatgtaatttaccgca |
143 |
Q |
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|||| ||| ||||||| |
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| T |
3831551 |
aatgaaatgtaccgca |
3831536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 8587336 - 8587287
Alignment:
| Q |
35 |
atgaatctatcattgaagtgtggcaagtgttttatttgttgacttgtaaa |
84 |
Q |
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|||||| |||||||||||||||| |||| ||||| | ||||||||||||| |
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| T |
8587336 |
atgaatgtatcattgaagtgtgggaagtattttactcgttgacttgtaaa |
8587287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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