View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20402_low_5 (Length: 430)

Name: NF20402_low_5
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20402_low_5
NF20402_low_5
[»] chr5 (1 HSPs)
chr5 (332-416)||(4002524-4002609)
[»] chr7 (1 HSPs)
chr7 (20-49)||(30363071-30363100)
[»] chr4 (1 HSPs)
chr4 (20-48)||(39537393-39537421)
[»] chr3 (1 HSPs)
chr3 (20-48)||(46391426-46391454)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 332 - 416
Target Start/End: Original strand, 4002524 - 4002609
Alignment:
Q  332 cagcaatctgcacaatgcagtgataacagacaactatcaaactatcagatctaaattaaatcaagag-tttgtattcttcagattt 416  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  4002524 cagcaatctgcaaaatgcagtgataacagacaactatcaaactatcagatctaaattaaaccaagagttttgtattcttcagattt 4002609  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 30363100 - 30363071
Alignment:
Q  20 cttgatctccaaaaaatgacgcgacaacaa 49  Q
    ||||||||||||||||||||||||||||||    
T  30363100 cttgatctccaaaaaatgacgcgacaacaa 30363071  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 39537393 - 39537421
Alignment:
Q  20 cttgatctccaaaaaatgacgcgacaaca 48  Q
    |||||||||||||||||||||||||||||    
T  39537393 cttgatctccaaaaaatgacgcgacaaca 39537421  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 46391454 - 46391426
Alignment:
Q  20 cttgatctccaaaaaatgacgcgacaaca 48  Q
    |||||||||||||||||||||||||||||    
T  46391454 cttgatctccaaaaaatgacgcgacaaca 46391426  T

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