View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_low_6 (Length: 428)
Name: NF20402_low_6
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 38180252 - 38179858
Alignment:
| Q |
17 |
aacatgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180252 |
aacatgttcaatatcattaccaggattgtcattctctcttgaaagccgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaa |
38180153 |
T |
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| Q |
117 |
tctttcaaagaacaaattcaagttctagatgaagaaaccaaccctaaagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttg |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180152 |
tctttcaaagaacaaattcaagttctatatgaagaaaccaaccctaaagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttg |
38180053 |
T |
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| Q |
217 |
atgttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgggcggtaaagatcctaatgatactttgtctggtggtggtgttgt |
316 |
Q |
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| T |
38180052 |
acgttggtaagatcaaaatgataccaatcggaccattgattccatatactttcttgggcggtaaagatcctaatgatacttcgtctagtggtggtgttgt |
38179953 |
T |
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| Q |
317 |
cggggttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttcatttggtactcttgctattttgt |
411 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38179952 |
cggtgttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttcatttggtactcttgctattttgt |
38179858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 38184921 - 38184527
Alignment:
| Q |
17 |
aacatgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
38184921 |
aacatgttcaatatcattaccaggattgtcattctctcttgaaagccgtgaccttccctcttttttattatcttcaaatatatatactatcgctactcga |
38184822 |
T |
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| Q |
117 |
tctttcaaagaacaaattcaagttctagatgaagaaaccaaccctaaagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184821 |
tctttcaaagaacaaattcaagttctagatgaagaaaccaaccctacagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttg |
38184722 |
T |
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| Q |
217 |
atgttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgggcggtaaagatcctaatgatactttgtctggtggtggtgttgt |
316 |
Q |
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| T |
38184721 |
atgttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgggcggtaaagatcctaatgatacttcgtctggtggtggtgttgt |
38184622 |
T |
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| Q |
317 |
cggggttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttcatttggtactcttgctattttgt |
411 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184621 |
cgatgttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttcatttggtactcttgctattttgt |
38184527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 38170434 - 38170044
Alignment:
| Q |
21 |
tgttcaatatcattaccaggattgtcattctctcttgaaagtcgtgaccttccctcttttttattatcttcaaatatatacactatcgctactcaatctt |
120 |
Q |
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|||| |||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||| ||||||||| ||||||| | ||| || |||| |
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| T |
38170434 |
tgtttaatatcattaccgggattgtcattctctcttaaaagccgcgaccttccctcttttttattggcttcaaatacatacacttttgctcttccatctc |
38170335 |
T |
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| Q |
121 |
tcaaagaacaaattcaagttctaga-tgaagaaaccaaccctaaagtacttgttaacaccgttgaagagtttgaattagaggcactaaaagccgttgatg |
219 |
Q |
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||||||| |||||||| ||| | || |||||||| |||||| | ||||||||| ||||||||||| ||||||||| | || ||||| || ||||||| |
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| T |
38170334 |
tcaaagagcaaattca-gttgttgaatgaagaaatcaacccaagagtacttgtgaacaccgttgaggagtttgaactggatgcactgaataaagttgatg |
38170236 |
T |
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| Q |
220 |
ttggtaagatcaaaatgataccaatcggaccattgattccatatgctttcttgggcggtaaagatcctaatgatactttgtctggtggtggtgttgtcgg |
319 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||| ||||||||||| || || ||||||| |||| || || |||||||| |||||| | |
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| T |
38170235 |
ttggtaagatcaaaatgatacccatcggaccgttgattccatctgctttcttggatggcaaggatcctacggataattcgtttggtggtgacgttgtccg |
38170136 |
T |
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| Q |
320 |
ggttgaatcagaagataattactttgaatggttggattcaaaggatgaatcgtctgtggtttatgtttcatttggtactcttgctattttgt |
411 |
Q |
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||||| ||| | ||| ||||| || ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |
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| T |
38170135 |
tgttgactcaaaggatgattacattcaatggttggattcaaaggatgaaaagtctgttgtttatgtttcatttggtactcttgctgttttgt |
38170044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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