View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20402_low_8 (Length: 392)
Name: NF20402_low_8
Description: NF20402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20402_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 41083846 - 41083488
Alignment:
| Q |
16 |
ataaactaaaaaattcatatttattgaaagagcaaagtttactactgttacatttacgcgatgctaccaaaacacacgaagcttgtttcccttgatatgg |
115 |
Q |
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| T |
41083846 |
ataaactaaaaaattcatatttattgaaagagcaaagtttactactgttacatttacgcgatgctaccaaaacacacgaagcttgtttcccttgatatgg |
41083747 |
T |
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| Q |
116 |
caagcaacatgaattaatgctgattacaaggtacgattatccagctccaattttcaatattccttggcaatttcttcattgcgttaaacgtgaaattaat |
215 |
Q |
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| T |
41083746 |
caagcaacatgaattaatgctgattacaaggtacaattatccagctccaatttttaatattccttggcaatttcttcattgcgttaaacgtgaaattaat |
41083647 |
T |
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| Q |
216 |
cttcctgttttgcgacaaagattccaggaaaggaaaacaaacaagatttggtgacattttgttgttatggactgtggaacatggaaatgtctcgaaaggt |
315 |
Q |
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| T |
41083646 |
cttcctgttttgcgacaaagattccaggaaaggaaaacaaacaagatttggtgacattttgttgttatggactgtggaacatggaaatgtctcgaaaggt |
41083547 |
T |
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| Q |
316 |
ttcaattatttgttgcaggccaactatttgatgatatttttctttcttgatgttaacct |
374 |
Q |
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| T |
41083546 |
ttcaattatttgtcgcaggccaactatttgatgatatttttctttcttgatgttaacct |
41083488 |
T |
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