View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20403_high_1 (Length: 487)
Name: NF20403_high_1
Description: NF20403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20403_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 26288664 - 26289117
Alignment:
| Q |
18 |
taagtttgttttcttttaactagatagagaacacacctctgtttgtgtataaaggaaatagttaggtttctttcattccaaatgagacattgaaagaaag |
117 |
Q |
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| T |
26288664 |
taagtttgttttcttttaactagatagagaacacacctctgtttgtgtataaaggaaatagttatgtttctttcattccaaatgagacattgaaagaaag |
26288763 |
T |
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| Q |
118 |
ggtactcttacttggctaagggaaagggtaattcctaacaagtcatgaaagaaaaggtactataagaaaggcatggtaatgttccggcaaaagacacttc |
217 |
Q |
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| T |
26288764 |
ggtactcttatttggctaagggaaagggtaattcctaacaagtcatgaaagaaaaggtactataagaaaggcatggtaatgttccggcaaaagacacttc |
26288863 |
T |
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| Q |
218 |
aacgctcaaatgaacatgtgatcgaataaatgatcatcgaaggagtaaagtgcacacaagacctttaaaccatgtcaattcactaaaaacaaacaattcc |
317 |
Q |
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| T |
26288864 |
aacgctcatatgaatatgtgatcgaataaatgatcatcgaaggagtaaagtgcacacaagacctttaaaccatgtcaattcactaaaaacatacaattcc |
26288963 |
T |
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| Q |
318 |
gtggacgtgctatacattttacaagatgtgtcgagtgaccacttgggggtatagtgactacggacgctttgacaaggagaaatgagactatggataagga |
417 |
Q |
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| T |
26288964 |
gtggacgtgctatacattttacaagatgtgtcgagtgatcacttgggggtatagtgactgcggacgctttgacgaggagaaatgagactatggataagga |
26289063 |
T |
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| Q |
418 |
aaagcacaagagctgccttatttgagttaattcaatttggttttggctaattat |
471 |
Q |
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| T |
26289064 |
aaagcacaagaactgccttatttgagttaattcaatttggttttggctaattat |
26289117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 22971480 - 22971438
Alignment:
| Q |
251 |
tcatcgaaggagtaaagtgcacacaagacctttaaaccatgtc |
293 |
Q |
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|||| |||||||||||||||||| |||||||| |||||||||| |
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| T |
22971480 |
tcatggaaggagtaaagtgcacataagaccttgaaaccatgtc |
22971438 |
T |
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