View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20403_high_3 (Length: 245)
Name: NF20403_high_3
Description: NF20403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20403_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 113288 - 113168
Alignment:
| Q |
109 |
aagatgatataaattgttttcatatgttcactcctctccccaccagataatttctatcaaagcaggaggaatgatgtcactatcaattgataatcttggt |
208 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
113288 |
aagatgatataaattgttttcat--gatcactcctctccccaccagataatttctatcaaagcaggaggaatgatgtcactatcaattgataatcttggt |
113191 |
T |
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| Q |
209 |
gccctatggatgtggggaaactg |
231 |
Q |
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||||||||||||||||||||||| |
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| T |
113190 |
gccctatggatgtggggaaactg |
113168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 4549797 - 4549835
Alignment:
| Q |
75 |
ataaatgtttatgtgcaagctatttctataacaaaagat |
113 |
Q |
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| T |
4549797 |
ataaatgcttatgtacaagctatttctataacaaaagat |
4549835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 5756809 - 5756779
Alignment:
| Q |
91 |
aagctatttctataacaaaagatgatataaa |
121 |
Q |
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| T |
5756809 |
aagctatttctataacaaaagatgatataaa |
5756779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 6074421 - 6074451
Alignment:
| Q |
91 |
aagctatttctataacaaaagatgatataaa |
121 |
Q |
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| T |
6074421 |
aagctatttctataacaaaagatgatataaa |
6074451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 51294150 - 51294086
Alignment:
| Q |
165 |
tcaaagcaggaggaatgatgtcactatcaattgataatcttggtgccctatggatgtggggaaac |
229 |
Q |
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| T |
51294150 |
tcaaagcaggaggaatgatgtctctggctattgataatcgcggaaccctatggatgtggggaaac |
51294086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 43116562 - 43116529
Alignment:
| Q |
80 |
tgtttatgtgcaagctatttctataacaaaagat |
113 |
Q |
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| T |
43116562 |
tgtttatgtgtaagctatttctataacaaaagat |
43116529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 3169387 - 3169336
Alignment:
| Q |
72 |
catataaatgtttatgtgcaagctatttctataacaaaagatgatataaatt |
123 |
Q |
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||||||| || ||||||| || |||||||||||||||||||||| ||||||| |
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| T |
3169387 |
catataagtgcttatgtgtaacctatttctataacaaaagatgaaataaatt |
3169336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 5563651 - 5563693
Alignment:
| Q |
91 |
aagctatttctataacaaaagatgatataaattgttttcatat |
133 |
Q |
| |
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||||||||||||||||||||||| | ||||||| ||||||||| |
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|
| T |
5563651 |
aagctatttctataacaaaagataaaataaattattttcatat |
5563693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 10296366 - 10296400
Alignment:
| Q |
77 |
aaatgtttatgtgcaagctatttctataacaaaag |
111 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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| T |
10296366 |
aaatgtttatgtgtaagctatttctataacaaaag |
10296400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 29699182 - 29699223
Alignment:
| Q |
72 |
catataaatgtttatgtgcaagctatttctataacaaaagat |
113 |
Q |
| |
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|||||||||| |||||| |||| ||||||||||||||||||| |
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|
| T |
29699182 |
catataaatgcttatgtacaagttatttctataacaaaagat |
29699223 |
T |
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