View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20403_low_1 (Length: 640)
Name: NF20403_low_1
Description: NF20403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20403_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 377
Target Start/End: Original strand, 7240661 - 7241031
Alignment:
| Q |
3 |
ttagttgagggattaactaagcatctttgtgttgcaggtttcttcttccattgtgaagtttttaaagcaagctcatccaacattgatattaagaagccat |
102 |
Q |
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| T |
7240661 |
ttagttgaggcattaaccatgcatattttttctgcaggtttcttcttccattgtgaagtttccaaagcaagctcctccaacattgttattaagcagccat |
7240760 |
T |
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| Q |
103 |
aacattcctagtaaagttgattggaatcttgttgttaatagagatttgaagatgatatatagagcgaaatggttcgtcaatggatgaggtaaatacatat |
202 |
Q |
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| T |
7240761 |
aacattcctagtatagttgattggaatcttgttgtaaatagagatttgaagatg----atagagcgaaatggttcgtcaatggctgaggtaaatacataa |
7240856 |
T |
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| Q |
203 |
caatcatgttgctcactttagtgcaaannnnnnnnctcttgcagcaaaagtcttgcgttttctttacct-tgtgcatcattccttgtgttgcaagaatcc |
301 |
Q |
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| T |
7240857 |
caatcatgttgctcactttagtgcaaattttttctctcttgcagcatgagtcttgctttttctttacttctttgcatcattccttgtgttgcaagaatcc |
7240956 |
T |
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| Q |
302 |
atttgaaagctcagttacttcttccatatttggaaaatcaggttgtgctaacgccgagcactagagttgtgcctac |
377 |
Q |
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| T |
7240957 |
atctgaaagcttagttacttcttccata-ttggaaataaaggttgtgctaacgcggagcactagaattgtgcctac |
7241031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 29263228 - 29263086
Alignment:
| Q |
17 |
aactaagcatctttgtgttgcaggtttcttcttccattgtgaagtttttaaagcaagctcatccaacattgatattaagaagccataacattcctagtaa |
116 |
Q |
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| T |
29263228 |
aactatgcatctttgtattgcaggtttctacttccaatgtaaagtttcctaagcaagctcctccaacattgatattaagcagccataacattcctagtaa |
29263129 |
T |
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| Q |
117 |
agttgattggaatcttgttgttaatagagatttgaagatgata |
159 |
Q |
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| T |
29263128 |
agaagattggaatcttgctgttaatagagctttgcagatgata |
29263086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 277 - 543
Target Start/End: Complemental strand, 29263020 - 29262757
Alignment:
| Q |
277 |
atcattccttgtgttgcaagaatccatttgaaagctcagttacttcttccatatttggaaaatcaggttgtgctaacgccgagcactagagttgtgccta |
376 |
Q |
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| T |
29263020 |
atcattccttgtgttgcaagaaaccatttgaaagctcattttcttcttccata-ctggaaactcaggttgttctagcgcgaagcactagagtagtgccta |
29262922 |
T |
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| Q |
377 |
cagctaatatagatcctctaatgtggttaactttcttaaaggtcttcgacttttctttccttttcttcgtcaatcaaatcgagcaggggggtttcttaat |
476 |
Q |
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| T |
29262921 |
ctgttaatatcgatcctctgacgtggttagcttgtttaaaggtattggagttttctttgctctattttctccgtcaaattcagca--gtgttatcttaat |
29262824 |
T |
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| Q |
477 |
gatatgcagtagaatgtctcttatgtctcaatcaaaactattgtaggttgaaggtgaaagtgcttac |
543 |
Q |
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| T |
29262823 |
gaaatgcagtagaaggtttcttacttatacatcaaaacaattgtaggttgaaggtggaaatgcttac |
29262757 |
T |
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