View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20403_low_5 (Length: 245)

Name: NF20403_low_5
Description: NF20403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20403_low_5
NF20403_low_5
[»] chr1 (4 HSPs)
chr1 (109-231)||(113168-113288)
chr1 (75-113)||(4549797-4549835)
chr1 (91-121)||(5756779-5756809)
chr1 (91-121)||(6074421-6074451)
[»] chr3 (2 HSPs)
chr3 (165-229)||(51294086-51294150)
chr3 (80-113)||(43116529-43116562)
[»] chr6 (1 HSPs)
chr6 (72-123)||(3169336-3169387)
[»] chr5 (2 HSPs)
chr5 (91-133)||(5563651-5563693)
chr5 (77-111)||(10296366-10296400)
[»] chr8 (1 HSPs)
chr8 (72-113)||(29699182-29699223)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 113288 - 113168
Alignment:
Q  109 aagatgatataaattgttttcatatgttcactcctctccccaccagataatttctatcaaagcaggaggaatgatgtcactatcaattgataatcttggt 208  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  113288 aagatgatataaattgttttcat--gatcactcctctccccaccagataatttctatcaaagcaggaggaatgatgtcactatcaattgataatcttggt 113191  T
Q  209 gccctatggatgtggggaaactg 231  Q
    |||||||||||||||||||||||    
T  113190 gccctatggatgtggggaaactg 113168  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 4549797 - 4549835
Alignment:
Q  75 ataaatgtttatgtgcaagctatttctataacaaaagat 113  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  4549797 ataaatgcttatgtacaagctatttctataacaaaagat 4549835  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 5756809 - 5756779
Alignment:
Q  91 aagctatttctataacaaaagatgatataaa 121  Q
    |||||||||||||||||||||||||||||||    
T  5756809 aagctatttctataacaaaagatgatataaa 5756779  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 6074421 - 6074451
Alignment:
Q  91 aagctatttctataacaaaagatgatataaa 121  Q
    |||||||||||||||||||||||||||||||    
T  6074421 aagctatttctataacaaaagatgatataaa 6074451  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 51294150 - 51294086
Alignment:
Q  165 tcaaagcaggaggaatgatgtcactatcaattgataatcttggtgccctatggatgtggggaaac 229  Q
    |||||||||||||||||||||| ||  | ||||||||||  ||  ||||||||||||||||||||    
T  51294150 tcaaagcaggaggaatgatgtctctggctattgataatcgcggaaccctatggatgtggggaaac 51294086  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 43116562 - 43116529
Alignment:
Q  80 tgtttatgtgcaagctatttctataacaaaagat 113  Q
    |||||||||| |||||||||||||||||||||||    
T  43116562 tgtttatgtgtaagctatttctataacaaaagat 43116529  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 3169387 - 3169336
Alignment:
Q  72 catataaatgtttatgtgcaagctatttctataacaaaagatgatataaatt 123  Q
    ||||||| || ||||||| || |||||||||||||||||||||| |||||||    
T  3169387 catataagtgcttatgtgtaacctatttctataacaaaagatgaaataaatt 3169336  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 5563651 - 5563693
Alignment:
Q  91 aagctatttctataacaaaagatgatataaattgttttcatat 133  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  5563651 aagctatttctataacaaaagataaaataaattattttcatat 5563693  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 10296366 - 10296400
Alignment:
Q  77 aaatgtttatgtgcaagctatttctataacaaaag 111  Q
    ||||||||||||| |||||||||||||||||||||    
T  10296366 aaatgtttatgtgtaagctatttctataacaaaag 10296400  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 29699182 - 29699223
Alignment:
Q  72 catataaatgtttatgtgcaagctatttctataacaaaagat 113  Q
    |||||||||| |||||| |||| |||||||||||||||||||    
T  29699182 catataaatgcttatgtacaagttatttctataacaaaagat 29699223  T

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