View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20404_low_1 (Length: 655)
Name: NF20404_low_1
Description: NF20404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20404_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 647
Target Start/End: Original strand, 2564011 - 2564649
Alignment:
| Q |
1 |
gttggaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatatttacagatacatataacaa |
100 |
Q |
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| T |
2564011 |
gttggaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatatttacacatacatataacaa |
2564110 |
T |
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| Q |
101 |
actaatgatcttttactaaacattagt---tccaaagaaagaattaactcaataattttactaggaattctatggtgggaagaaggacttagcaaagatt |
197 |
Q |
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| T |
2564111 |
actaatgatcttttactaaacattagtagttccaaagaaagaattaactcaataattttactaggaattctatggtgggaagaaggacttagcaaagatt |
2564210 |
T |
|
| Q |
198 |
catagtgatggtgaatcatttatatgtgctttgatgccaggaagttactctctacagattnnnnnnnctcctggtatatatttacttataggtcaatctt |
297 |
Q |
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| T |
2564211 |
catagtgatggtgaatcatttatatgtgctttgatgcaaggaagttactctctacagattaaaaaaacacctggtatatatttacttataggtcaatctt |
2564310 |
T |
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| Q |
298 |
atttcaatcaacattaattcattattgatggaatgagctgaattagcatttgatttattattaactcaggtggacttttgtatactagagatagtaataa |
397 |
Q |
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| T |
2564311 |
atttcaatcaacattaattcattattgatggaatgagctgaatta------------ttattaactcaggtggacttttgtatactagagatagtaataa |
2564398 |
T |
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| Q |
398 |
tttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatcctaaacaaaaatcatattgatggaattcattgtggctctaccaatttc |
497 |
Q |
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| T |
2564399 |
tttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatcctaaacaaaaataatattgatggaattcattgtggctctaccaatttc |
2564498 |
T |
|
| Q |
498 |
acctcctctgaaattaaagcctttgcaaaatcacaggtattttgtacactaatttatgactc-taagacattaagcccatttctttattattttggttca |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
2564499 |
acctcctctgaaattaaagcctttgcaaaatcacaggtattttgtacactaatttatgactcttaagacatttagcccatttctttattattttggttca |
2564598 |
T |
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| Q |
597 |
taattattataactaaaaattgaatgtgtacataacataggtggactacat |
647 |
Q |
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| T |
2564599 |
taattattataactaaaaattgaatgtgtacataacataggtggactacat |
2564649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 350 - 537
Target Start/End: Original strand, 2574246 - 2574433
Alignment:
| Q |
350 |
atttattattaactcaggtggacttttgtatactagagatagtaataatttgcaatacaccacgacctcaaccatggtactattcattttctccaaaatc |
449 |
Q |
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||||||| ||||||||||||| ||| |||||| ||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2574246 |
atttattgttaactcaggtgggcttctgtatattagagatagcagtaatttgcaatataccacaacctcaaccatggtactattcattttctccaaaatc |
2574345 |
T |
|
| Q |
450 |
ctaaacaaaaatcatattgatggaattcattgtggctctaccaatttcacctcctctgaaattaaagcctttgcaaaatcacaggtat |
537 |
Q |
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| T |
2574346 |
ttaaacaaaaaccatattgatggaatacactgtggctctgcccatttttcaccctctgagattagagcctttgcaaaattacaggtat |
2574433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2573861 - 2573944
Alignment:
| Q |
1 |
gttggaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatattta |
84 |
Q |
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| T |
2573861 |
gttggagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatattta |
2573944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 2574055 - 2574148
Alignment:
| Q |
160 |
aggaattctatggtgggaagaaggacttagcaaagattcatagtgatggtgaatcatttatatgtgctttgatgccaggaagttactctctaca |
253 |
Q |
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| T |
2574055 |
aggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctctctaca |
2574148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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