View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20404_low_2 (Length: 358)
Name: NF20404_low_2
Description: NF20404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20404_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 35519723 - 35520057
Alignment:
| Q |
8 |
atatagcacctaaatttcattgaaccaaataaactcaattattccaatcttcaaaatattctagctacaaattaacattgtatgaaaaatgatgtcaagg |
107 |
Q |
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| T |
35519723 |
atatagcacctaaatttcattgaaccaaataaactcaattattccaatcttcaaaatattctagctacaaattaacattgtatgaaaaatgatgtcaagg |
35519822 |
T |
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| Q |
108 |
acaacacctctagggtttgaaattgaaaatcaaggcctacaaatgtttcctatggtcacggaagatttgatgccattgccaaattccatggaaggaattt |
207 |
Q |
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| T |
35519823 |
acaacacctctagggtttgaaattgaaaatcaaggcctacaaatgtttcctatggtcacggaagattttatgccattgccaaattccatggaaggaattt |
35519922 |
T |
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| Q |
208 |
caagttcaacttcaccctccaattccctcctcttcaatctctctactctcaaagacaagctcaatcaagtgcaaactcttgttggtgtcattctctcccc |
307 |
Q |
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| T |
35519923 |
caagttcaacttcaccctccaattccctcctcttcaatctctctactctcaaagacaagcttaatcaagtgcaaactcttgttggtgtcattctctcccc |
35520022 |
T |
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| Q |
308 |
aaatcaacaagactcatcaacttccatggcattat |
342 |
Q |
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| T |
35520023 |
aaatcaacaagactcatcaacttccatggcattat |
35520057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 123 - 342
Target Start/End: Original strand, 35535939 - 35536155
Alignment:
| Q |
123 |
tttgaaattgaaaatcaaggcctacaaatgtttcctatggtcacggaagatttgatgccattgccaaattccatggaaggaatttcaagttcaacttcac |
222 |
Q |
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| T |
35535939 |
tttgaaattggaaatcaaggcctacaaatgtttcctatggtcacagaagatttgacgccattgccaaatt---tggaaagaatttctagttcaactttac |
35536035 |
T |
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| Q |
223 |
cctccaattccctcctcttcaatctctctactctcaaagacaagctcaatcaagtgcaaactcttgttggtgtcattctctccccaaatcaacaagactc |
322 |
Q |
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| T |
35536036 |
cctccaattccctcctcttcaatctctctactctcaaagacaagctcaatcaagtgcaaaatcttgttggtgtcattctctccccaaatcaacaagactc |
35536135 |
T |
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| Q |
323 |
atcaacttccatggcattat |
342 |
Q |
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|||||||||||||||||||| |
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| T |
35536136 |
atcaacttccatggcattat |
35536155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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