View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20404_low_3 (Length: 270)
Name: NF20404_low_3
Description: NF20404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20404_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 45936322 - 45936523
Alignment:
| Q |
13 |
gataattctatcattttaccatggacaagtaattggtataccagaatcaaaaattcattggagttatgctgagagaattgaaggagctggtgataactcc |
112 |
Q |
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| T |
45936322 |
gatacttctatcattttaccatggacaagtaattggtataccagaatcaaaaattcattggagttatgctgagagaattgaaggagctggtgataactcc |
45936421 |
T |
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| Q |
113 |
tctgctgcccaatctaataatgtgcttctaggccctattctcttaattctcagtgctcttatttggtcactatggttcatcattcaagtaagcatatgca |
212 |
Q |
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| T |
45936422 |
tctgctgcccaatctaataatgtgcttctaggccctattctcttaattctcagtgctcttatttggtcactatggttcatcattcaagtaagcatatgca |
45936521 |
T |
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| Q |
213 |
tt |
214 |
Q |
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|| |
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| T |
45936522 |
tt |
45936523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 10561796 - 10561866
Alignment:
| Q |
137 |
cttctaggccctattctcttaattctcagtgctcttatttggtcactatggttcatcattcaagtaagcat |
207 |
Q |
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|||||||||||| | ||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
10561796 |
cttctaggccctgtgctcttaattcttaatgctcttgtttggtcactatggtttatcattcaagtaagcat |
10561866 |
T |
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