View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20405_high_2 (Length: 395)
Name: NF20405_high_2
Description: NF20405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20405_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 8694647 - 8694287
Alignment:
| Q |
18 |
attgcaattagctaaaattttgagaaatcacggtgaattaaatatatgcactataacttattttgtccgttgatttacaatcagatggctcaaatttcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8694647 |
attgcaattagctaaaattttgagaaatcacggtgaattaaatatatgcactataacttattttgtccgttgatttacaatcagatggctcaaatttcaa |
8694548 |
T |
|
| Q |
118 |
ctcggtctcgcacaaatattacaacagaaaatctcatttccgagacacaacacaagtcattgtttccattattgctaatatattgaacttgcactttgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8694547 |
ctcggtctcgcacaaatattacaacagaaaatctcatttccgagacacaacacaagtcattgtttccattattgctaatatattgaacttgcactttgaa |
8694448 |
T |
|
| Q |
218 |
caagtcaataaacaatgataatttgctctggtcttttcctatgagaagcaaaatattaacgtgtgccaaaagaaagagctgaatattaatgtcattatca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8694447 |
caagtcaataaacaatgataatttgctctggtcttttcctatgagaagcaaaatattaacgtgtgccaaaagaaagagctgaatattaatgtcattatca |
8694348 |
T |
|
| Q |
318 |
atttagactgcttgtaatttgctttgttttggtggtttgttatgctccccactagcatagt |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8694347 |
atttagactgcttgtaatttgctttgttttggtggtttgttatgctccccactagcatagt |
8694287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 238 - 371
Target Start/End: Complemental strand, 8701754 - 8701613
Alignment:
| Q |
238 |
atttgctctggtcttttcctatgagaagcaaaatattaacgtgtgccaaaagaaagagctgaatat----taatgtcattatcaatttagactgcttgta |
333 |
Q |
| |
|
||||| |||||||| ||||||| ||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||| | |
|
|
| T |
8701754 |
atttgatctggtctcttcctatcagaagcagaatattaacatgtaccaaaagaaagagctgaatattaattaatgtcattatcaaattaaactgcttgaa |
8701655 |
T |
|
| Q |
334 |
atttgctttgttttgg----tggtttgttatgctccccacta |
371 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8701654 |
atttgctttgttttggtggttggtttgttatgctccccacta |
8701613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University