View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20405_high_3 (Length: 266)

Name: NF20405_high_3
Description: NF20405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20405_high_3
NF20405_high_3
[»] chr4 (4 HSPs)
chr4 (174-255)||(42560464-42560545)
chr4 (32-107)||(42560329-42560403)
chr4 (25-108)||(42576756-42576838)
chr4 (194-257)||(42576991-42577054)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 42560464 - 42560545
Alignment:
Q  174 cgttgcttcagtacatatattatcattccgcaaccaacacgcttttgataacatttgcatcgcaatcaatagtcttccctat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  42560464 cgttgcttcagtacatatattatcattccgcaaccaacacgcttttgataacatttgcatcgcaatcgatagtcttctctat 42560545  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 42560329 - 42560403
Alignment:
Q  32 ttaacaaatatctttaactgtgataacacccaaaaatgacacactcactcatgttggattccaacaggaggcaaat 107  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42560329 ttaacagatatctttaactgtgataacacccaaaa-tgacacactcactcatgttggattccaacaggaggcaaat 42560403  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 42576756 - 42576838
Alignment:
Q  25 ttcttaattaacaaatatctttaactgtgataacacccaaaaatgacacactcactcatgttggattccaacaggaggcaaata 108  Q
    |||||| |||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  42576756 ttcttagttaacacatatctttaa-tgtgagaacacacaaaaatgacacactcactcatgttggattccaacagaaggcaaata 42576838  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 42576991 - 42577054
Alignment:
Q  194 tatcattccgcaaccaacacgcttttgataacatttgcatcgcaatcaatagtcttccctatgc 257  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  42576991 tatccttctgcaaccaacacgcttttaataacatttgcatcgcaatcaatagtcttctctatgc 42577054  T

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