View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20405_high_4 (Length: 260)
Name: NF20405_high_4
Description: NF20405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20405_high_4 |
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| [»] scaffold0267 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 33637316 - 33637561
Alignment:
| Q |
3 |
ttaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacagttgttgcatag |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33637316 |
ttaaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaatacaaacaattgttgcatag |
33637415 |
T |
|
| Q |
103 |
aagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctttatc |
202 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33637416 |
aagcttaatgtggaagaggacggggaaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctctatc |
33637515 |
T |
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| Q |
203 |
atctctcctattatacataataatatcatcaaaagctcctttgcta |
248 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33637516 |
atctctcctattatacatactaatatcatcaaaagctcctttgcta |
33637561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 13785 - 13615
Alignment:
| Q |
5 |
aaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcataga |
103 |
Q |
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|||||||||| ||||||| |||||| ||||||| ||||| |||| | | ||||| |||||||||||||||| ||| ||||||| |||||||||| |
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| T |
13785 |
aaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcacaacctaacataaattcagaaaaacaaacatttgttgcatacg |
13686 |
T |
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| Q |
104 |
agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
174 |
Q |
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|| |||||||||| ||||| |||||||||||||||| |||||||||||||||||| | ||||||||||| |
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| T |
13685 |
agattaatgtggacgaggacaaggcaaaaccaagctctgcatatgttcatcagcataacgaatttggttgt |
13615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 3838304 - 3838134
Alignment:
| Q |
5 |
aaactatctattgaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcataga |
103 |
Q |
| |
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|||||||||| ||||||| |||||| ||||||| ||||| |||| | | |||| |||||||||||||||| ||| |||||||||||||||||| |
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| T |
3838304 |
aaactatctaaggaaaacataattaaagaaccatcaatagatatcatgccaaatgcaaaacctaacataaattcagaaaaacaaacagttgttgcatacg |
3838205 |
T |
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| Q |
104 |
agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgt |
174 |
Q |
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|| |||||||||| ||||| |||||||||||||||| ||||||||| |||||||| | ||||||||||| |
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| T |
3838204 |
agattaatgtggatgaggacaaggcaaaaccaagctctgcatatgttcctcagcataacgaatttggttgt |
3838134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 224
Target Start/End: Complemental strand, 29125230 - 29125102
Alignment:
| Q |
96 |
tgcatagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcag |
195 |
Q |
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||||||||||||||||| ||| ||||| | ||||||||||| |||| ||||||||||| ||||||| |||||||| || |||||| |||||| | |
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| T |
29125230 |
tgcatagaagcttaatgcggatgaggaagaggcaaaaccaaactctacatatgttcatgagcatacataatttggtggttgagaagtctaatatgactaa |
29125131 |
T |
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| Q |
196 |
ctttatcatctctcctattatacataata |
224 |
Q |
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| T |
29125130 |
ctctatcatctctcctactatacataata |
29125102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 29126809 - 29126661
Alignment:
| Q |
17 |
gaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattcaaaata-caaacagttgttgcatagaagcttaatgtgg |
115 |
Q |
| |
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|||||||||||||||||| | |||||| ||||||| |||||||| || ||| || ||| |||| | |||| ||||||||||||||| |||||| || |
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| T |
29126809 |
gaaaacacaattaaggaatattcaatagttatcacaccacttgcacaacttaatgtatattaaaaaaatcaaattgttgttgcatagaagtttaatg-gg |
29126711 |
T |
|
| Q |
116 |
aagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaa |
165 |
Q |
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|| |||| ||||||| |||||| | |||||||||| | ||||||||| |
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| T |
29126710 |
aatgagatgaggcaaaatcaagctatgcatatgttcaccgacataccaaa |
29126661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 13784126 - 13784247
Alignment:
| Q |
104 |
agcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctttatca |
203 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||||| | |||||||||||| || |||||||| ||||| | ||| || || | |||| || ||||| |
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| T |
13784126 |
agcttaatgtggatgagaatgaggcaaaaccaagctatgcatatgttcatcggccgcccaaattttgttgttaggaaattgaagaaattcaactatatca |
13784225 |
T |
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| Q |
204 |
tctctcctattatacataataa |
225 |
Q |
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||||||| |||||||||||||| |
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| T |
13784226 |
tctctccgattatacataataa |
13784247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 33781 - 33907
Alignment:
| Q |
99 |
atagaagcttaatgtggaagaggatggggcaaaaccaagctcttcatatgttcatcagcataccaaatttggttgtcaagaagttcaatatgttcagctt |
198 |
Q |
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|||| ||||||||||||| ||||| | |||||||||||||| |||||||||||| || |||||||||||||| | ||||| || | || | || |
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| T |
33781 |
ataggagcttaatgtggatgaggacgaggcaaaaccaagctacgcatatgttcatcggccgcccaaatttggttgttaggaagtcgaagaaattgaacta |
33880 |
T |
|
| Q |
199 |
tatcatctctcctattatacataataa |
225 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
33881 |
tatcatctctccgattatacataataa |
33907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 20475663 - 20475806
Alignment:
| Q |
17 |
gaaaacacaattaaggaaccattaatagtcatcacactacttgcacgacctaacataaattca-aaatacaaacagttgttgcatagaagcttaatgtgg |
115 |
Q |
| |
|
||||||||||||||| |||||| ||| || | || | |||| || | |||| ||||||||| ||| | ||| ||||||||||| | |||||||| ||| |
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| T |
20475663 |
gaaaacacaattaagtaaccatcaatcgtaaacatgccacttacataatctaaaataaattcagaaaaataaatagttgttgcattgcagcttaatttgg |
20475762 |
T |
|
| Q |
116 |
aagaggatggggcaaaaccaagctcttcatatgttcatcagcat |
159 |
Q |
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| |||| | |||||||||||||||| |||||| |||| ||||| |
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| T |
20475763 |
acaaggacgaggcaaaaccaagctctgcatatgctcatgagcat |
20475806 |
T |
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