View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20405_high_5 (Length: 250)
Name: NF20405_high_5
Description: NF20405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20405_high_5 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 33637284 - 33637052
Alignment:
| Q |
1 |
tgctagcttagaatcaaatcctttggatgaagatattttaattttatactagttattatgagttaatttatattcctccacttgctattgatttcatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33637284 |
tgctagcttagaatcaaatcctttggatgaagatattttaattttatactagttattatgagttaatttatattcctccacttgctattgatttcatttg |
33637185 |
T |
|
| Q |
101 |
ctccatagtttattttaagatatgcattgtcagatattagatgtgttgaatatattagaaaggcttttcggcatctttatacagtaggttcaattagttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
33637184 |
ctccatagtttattttaagatatgcattgtcagatattagatgtgttgaatatattagaaaggctttacggcatctttatacagtaggttcagttagttt |
33637085 |
T |
|
| Q |
201 |
tttggtcatcatggcaaaaaggatgacttcttt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
33637084 |
tttggtcatcatggcaaaaaggatgacttcttt |
33637052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 13861 - 13911
Alignment:
| Q |
53 |
ttattatgagttaa-tttatattcctccacttgctattgatttcatttgct |
102 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13861 |
ttattatgagttaagtttatatttctccacttgctattgatttcatttgct |
13911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 3838380 - 3838430
Alignment:
| Q |
53 |
ttattatgagttaa-tttatattcctccacttgctattgatttcatttgct |
102 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3838380 |
ttattatgagttaagtttatatttctccacttgctattgatttcatttgct |
3838430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 13783911 - 13783860
Alignment:
| Q |
23 |
ttggatgaagatattttaattttatactagttattatgagttaatttatatt |
74 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||| ||||||||| |||||||| |
|
|
| T |
13783911 |
ttggatgatgatattttaattttatattaattagtatgagttagtttatatt |
13783860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University