View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20405_low_1 (Length: 1052)
Name: NF20405_low_1
Description: NF20405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20405_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 687; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 19 - 827
Target Start/End: Complemental strand, 46937319 - 46936517
Alignment:
| Q |
19 |
gggcagttcagaaagctgaagagatattaaccaagactccaaatgcctatatccttcagcaatttgaaaaccccgccaatccaaaggtatctatctactc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46937319 |
gggcagttcagaaagctgaagagatattaaccgagactccaaatgcctatatccttcagcaatttgaaaaccccgccaatccaaaggtatctatctactc |
46937220 |
T |
|
| Q |
119 |
atttgttctaaaactttggcagttaatagtcgacaactttggatgacacatttgttattatcgttgtatttacaggtgcattatgaaaccactggtccag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46937219 |
atttgttctaaaactttggcagttaatagtcgacaactttggatgacacatttgttattatcgttgtatttacaggtgcattatgaaaccactggtccag |
46937120 |
T |
|
| Q |
219 |
agatatggaaaggcacaggagggaaagttgatgcatttgtcagtggtataggtactggtggtaccataacaggtgttgggaaatatcttaaagagcagaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46937119 |
agatatggaaaggcacaggagggaaagttgatgcatttgtcagtggtataggtactggtggtaccataacaggtgttgggaaatatcttaaagagcagaa |
46937020 |
T |
|
| Q |
319 |
ttccaatatcaaggttatctttaannnnnnnnnnnncgtatacaacactaagatgaataagtgcaagatttggttctgatttatagctgtagttatcctc |
418 |
Q |
| |
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|||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46937019 |
ttccaatatcaaggttatctttaa--------------tttttaacactaagatgaataagtgcaagatttggttctgatttatagctgtagttatcctc |
46936934 |
T |
|
| Q |
419 |
tcctctttcttcctaatttatcgttttgtttcaatttttatattatgcagctgtatggggtggagccagtcgaaagtcctgtactgtccggaggaaagcc |
518 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46936933 |
tcctctttcctcctaatttatcgttttgtttcaatttttatattatgcagctgtatggggtggagccagtcgaaagtcctgtactgtccggaggaaagcc |
46936834 |
T |
|
| Q |
519 |
tggttagttataacactgttttgttccttagagttgaaataagaacttactttcgaagctgttgctgatgtgcaaattgccatgataaacgtctaggtcc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46936833 |
tggttagttataacactgttttgttccttagagttgaaataagaacttactttcgaagctgttgctgatgtgcaaattgccatgataaacgtctaggtcc |
46936734 |
T |
|
| Q |
619 |
acacaagattcaagggattggtgctggctttgttcccggggtattggacgttagtcttgtcgacgaagtaattcaagtaagttttaagg-------nnnn |
711 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46936733 |
acacaagattcaagggattggtgctggctttgttcccggggtattggacgttagtcttgtcgacgaagtaattcaagtaagttttaaggtttttttaata |
46936634 |
T |
|
| Q |
712 |
nnnataatggtgcactaaaacccggggtgttggttgttagtcttgttggatgttagtcttgtcg-caaagtaattcaagtaagttcccagggtgctgctt |
810 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |
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| T |
46936633 |
attataatggtgcactaaaacccggggtgttggttgttagtcttgttggatgttagtcttgtcgacgaagtaattcaagtaagttcccggggtgctgctt |
46936534 |
T |
|
| Q |
811 |
tagtttttactgctggc |
827 |
Q |
| |
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||||||||||||||||| |
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| T |
46936533 |
tagtttttactgctggc |
46936517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 899 - 1044
Target Start/End: Complemental strand, 46936515 - 46936380
Alignment:
| Q |
899 |
aatgcacaaaaagccaattatggacttcttaaatcctggtttactacatcttacgcactgcaccacaatacacacttatttatcatgtgaatataatttt |
998 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46936515 |
aatgcacaaaaagccaattatggacttcttaaataca----------aacttacgcactgcaccacaatacaaacttatttatcatgtgaatataatttt |
46936426 |
T |
|
| Q |
999 |
tagaaggatgatgatggtgtcattattttgcaatattcttggacat |
1044 |
Q |
| |
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|||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
46936425 |
tagaaggatgatgatggtgtcattattttgcaatttttttggacat |
46936380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 36277050 - 36277132
Alignment:
| Q |
24 |
gttcagaaagctgaagagatattaaccaagactccaaatgcctatatccttcagcaatttgaaaaccccgccaatccaaaggt |
106 |
Q |
| |
|
||||||||||| ||||||||| || | |||||||| ||||| || || ||||||||||||||||| || || || |||||||| |
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| T |
36277050 |
gttcagaaagccgaagagatactagcaaagactcccaatgcttacattcttcagcaatttgaaaatcctgcaaacccaaaggt |
36277132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 36277222 - 36277340
Alignment:
| Q |
200 |
tatgaaaccactggtccagagatatggaaaggcacaggagggaaagttgatgcatttgtcagtggtataggtactggtggtaccataacaggtgttggga |
299 |
Q |
| |
|
|||||||| ||||| |||||||| |||||| || | || |||||||||||||| |||| ||||||||| || || ||||| ||||||||| ||| | |
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| T |
36277222 |
tatgaaactactggaccagagatctggaaaagctctggtgggaaagttgatgcccttgtttctggtataggaaccggaggtacagtaacaggtgctggaa |
36277321 |
T |
|
| Q |
300 |
aatatcttaaagagcagaa |
318 |
Q |
| |
|
||||| | ||||||||||| |
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|
| T |
36277322 |
aatatttgaaagagcagaa |
36277340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 9e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 409 - 676
Target Start/End: Original strand, 25125349 - 25125594
Alignment:
| Q |
409 |
agttatcctctcctctttcttcctaatttatcgttttgtttcaatttttatattatgcagctgtatggggtggagccagtcgaaagtcctgtactgtccg |
508 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||| |
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| T |
25125349 |
agttatcctctcctctttcctcctaatttctcgttttatttcaatttttatattatgcagctttatggcgtggagccagttgaaa--------------- |
25125433 |
T |
|
| Q |
509 |
gaggaaagcctggttagttataacactgttttgttccttagagttgaaataagaacttactttcgaagctgttgctgatgtgcaaattgccatgataaac |
608 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
25125434 |
-------gcctggctagttataacactgttttgttccttagagttgaaataagaacttacttttgaagctgttgctgatgtgcaaattgccatgacaaac |
25125526 |
T |
|
| Q |
609 |
gtctaggtccacacaagattcaagggattggtgctggctttgttcccggggtattggacgttagtctt |
676 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
25125527 |
gtctacgaccacacaagattcaagggattggtgctggttttgttaccggggtattggacgttagtctt |
25125594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 192 - 335
Target Start/End: Original strand, 862551 - 862694
Alignment:
| Q |
192 |
aggtgcattatgaaaccactggtccagagatatggaaaggcacaggagggaaagttgatgcatttgtcagtggtataggtactggtggtaccataacagg |
291 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||| | |||||| |||| |||||||| ||| ||||||||||||||||||||||| || |
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| T |
862551 |
aggtacattatgaaaccaccggtccagagatatggaaaggcacggatgggaaaattgacgcatttgtttctgggataggtactggtggtaccataaccgg |
862650 |
T |
|
| Q |
292 |
tgttgggaaatatcttaaagagcagaattccaatatcaaggtta |
335 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
862651 |
tgctgggaaatatcttaaagagcaaaattccaatataaaggtta |
862694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 862394 - 862478
Alignment:
| Q |
24 |
gttcagaaagctgaagagatattaaccaagactccaaatgcctatatccttcagcaatttgaaaaccccgccaatccaaaggtat |
108 |
Q |
| |
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|||||||||||||||||| | || | ||||| || |||||||| || ||||| |||||||||||||| |||||||| ||||||| |
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| T |
862394 |
gttcagaaagctgaagagctgttggctaagacacccaatgcctacatacttcaacaatttgaaaaccctgccaatcccaaggtat |
862478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 613 - 651
Target Start/End: Original strand, 863366 - 863404
Alignment:
| Q |
613 |
aggtccacacaagattcaagggattggtgctggctttgt |
651 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
863366 |
aggtcctcacaagattcaagggattggtgctggctttgt |
863404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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