View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20405_low_2 (Length: 723)
Name: NF20405_low_2
Description: NF20405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20405_low_2 |
 | |
|
| [»] scaffold0220 (1 HSPs) |
| | |
|
| [»] scaffold0100 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 4567222 - 4566822
Alignment:
| Q |
1 |
ggtttcaaggttttgaagaagatgaaggaggggtatatttgtcattttgaattgatcaggggtatttttgtccattcacacgtccttttgctgagtcgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| || |
|
|
| T |
4567222 |
ggtttcaaggttttgaagaagatgaaggaggggtatatttgtcattttgaattgatcaggggtatttttgtccattcacatgtccttttgccgagtcatt |
4567123 |
T |
|
| Q |
101 |
caagtggtcagctaattaacagagccacgtcagtaatctggtgacatgacagttaagggatgaaattttaaatgacctttgtgaggatagattgtcagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4567122 |
caagtggtcagctaattaacagagccacgtcagtaatctggtgacatgacagttaagggatgaaattttaaatgacctttgtgaggatagattgtcagga |
4567023 |
T |
|
| Q |
201 |
ttaacgaataaagaacccattttttaaatgactcatattcgtagggacgaaacacatataaaaacctataataaattgactggtcatacaaacagtatga |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |
|
|
| T |
4567022 |
ttaacgaataaagagaccattttttaaatgactcatatttgtagggacgaaacacatataaaaacctataataaattggctggtcatacaatcagcatga |
4566923 |
T |
|
| Q |
301 |
aaaacaatgataaaatgacacttagattctattcctatgctgaaataaatattac-aacgtaactatttttcattgcaacctcatacaattaagtcgtac |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4566922 |
aaaacaatgataaaatgacacttagattctattcctatgctgaaataaatattacaaacgtaactatttttcattgcaacctcatacaattaagtcgtac |
4566823 |
T |
|
| Q |
400 |
a |
400 |
Q |
| |
|
| |
|
|
| T |
4566822 |
a |
4566822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 267 - 682
Target Start/End: Complemental strand, 14704034 - 14703616
Alignment:
| Q |
267 |
tataataaattgactggtcatacaaacagtatgaaaaacaatgataaaatgacacttagattctattcctatgctgaaataaatattacaa-cgtaacta |
365 |
Q |
| |
|
|||||||||| | |||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14704034 |
tataataaataggctggacatacaaacagcatgaaaaacaatgataaaataacactttgattctattcctatgctgaaataaatattacaaacgtaacta |
14703935 |
T |
|
| Q |
366 |
tttttcattgcaacctcatacaattaagtcgtacatctatctttgttgtttacatgtgtaattttctatgtacaatagcgtctggctaacgtgtgaaacc |
465 |
Q |
| |
|
|| |||||||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
14703934 |
ttattcattgcaaccatatacaattaagtcatacatccatctttgttatttacatgtgtaattttcgatgtataatag-gtctggctaacgtgtgaaacc |
14703836 |
T |
|
| Q |
466 |
ttgcacatgataagttttgttgatttttctctttttc---agttggaaattaatgacccttatcgtgtgtaagattgtagacgttagaaaaaccctttat |
562 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||| |
|
|
| T |
14703835 |
ttgcacataataagttttgttgattttcctttttttttttagttggaaattaatgacccttattgtgtgcaagattgtagacgttaaaaaaactctttat |
14703736 |
T |
|
| Q |
563 |
aattacctagctatacacttacgatattgttttgaatttgaagaatttaaactcgaaagcaaaacaataatgcaaacataacttgctgttgcagcctgca |
662 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
14703735 |
aattatctagctatacacttacgatatagttttgaatctaaagaatttaaactcgaaagcaaaacaataatgcaaacataacttgctgctgcagcctgga |
14703636 |
T |
|
| Q |
663 |
agacttgctgatgagtaaga |
682 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
14703635 |
agacatgctgatgagtaaga |
14703616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 267 - 700
Target Start/End: Complemental strand, 49041244 - 49040807
Alignment:
| Q |
267 |
tataataaattgactggtcatacaaacagtatgaaaaacaatgataaaatgacacttagattctattcctatgctgaaataaatattacaa-cgtaacta |
365 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||||||||| |||||||| | |||| |||||||||||||||||||||||||||| |||| ||| || | |
|
|
| T |
49041244 |
tataataaataggctggtcatacaaacagcatgaaaaacaaagataaaataaaactttgattctattcctatgctgaaataaatatcacaaacgtgacaa |
49041145 |
T |
|
| Q |
366 |
tttttcattgcaacctcatacaattaagtcgtacatctatctttgttgtttacatgtgtaattttctatgtacaatagcgtctggctaacgtgtgaaacc |
465 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||| ||||||||| ||||||||||||||||||||| || ||||| ||| ||||||||||||||||| |
|
|
| T |
49041144 |
tttttcattgcaatcatatacaattaagttgtacatccatctttgttatttacatgtgtaattttctatatataatagtgtccggctaacgtgtgaaacc |
49041045 |
T |
|
| Q |
466 |
ttgcacatgataagttttgttgatttttct-ctttttcagttggaaattaatgacccttatcgtgtgtaagattgtagacgttagaaaaaccctttataa |
564 |
Q |
| |
|
||||||| | |||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49041044 |
ttgcacacggtaagttttgttgatttttcttcttttttagttggaaattaatgatccttatcatgtgcaagattgtagacgttagaaaaaccctttataa |
49040945 |
T |
|
| Q |
565 |
ttacctagctatacacttacgatattgttttgaatttgaagaatttaaactcgaaagcaaaacaataatgcaaacataacttgctgttgcagcctgcaag |
664 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||| || | |||||||| |
|
|
| T |
49040944 |
ttatctagctatacacttagaatattgttttgaatctgaagaatttaaactc-aaagcaaaacaataatgcaaacataactagctgctgaaacctgcaag |
49040846 |
T |
|
| Q |
665 |
acttgctgatgagtaagacattat---aggaactttgat |
700 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49040845 |
acttgctgatgagtaagacattattacaggaactttgat |
49040807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 435 - 595
Target Start/End: Complemental strand, 4566826 - 4566666
Alignment:
| Q |
435 |
gtacaatagcgtctggctaacgtgtgaaaccttgcacatgataagttttgttgatttttctctttttcagttggaaattaatgacccttatcgtgtgtaa |
534 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4566826 |
gtacaatagcgtctggctaacgcgtgaaaccttgcacatgataagttttgttgattttcctctttttcagttggaaattaatgacccttatcgtgtgtaa |
4566727 |
T |
|
| Q |
535 |
gattgtagacgttagaaaaaccctttataattacctagctatacacttacgatattgtttt |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4566726 |
gattgtagacgttagaaaaaccctttataattacctagctatacacttacgatattttttt |
4566666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 404 - 621
Target Start/End: Complemental strand, 4568200 - 4567983
Alignment:
| Q |
404 |
atctttgttgtttacatgtgtaattttctatgtacaatagcgtctggctaacgtgtgaaaccttgcacatgataagttttgttgatttttctctttttc- |
502 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
4568200 |
atctttattatttacatgtgtaattttcgatgtataatag-gtctggctaacgtgtgaaaccttgcacataataagttttgttgattttccttttttttt |
4568102 |
T |
|
| Q |
503 |
agttggaaattaatgacccttatcgtgtgtaagattgtagacgttagaaaaaccctttataattacctagctatacacttacgatattgttttgaatttg |
602 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| | |
|
|
| T |
4568101 |
agttggaaattaatgacccttatcatgtgcaagattgtagacgttagaaaaaccctttataattatctagctatacacttacgatatagttttgaatcta |
4568002 |
T |
|
| Q |
603 |
aagaatttaaactcgaaag |
621 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4568001 |
aagaatttaaactcgaaag |
4567983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 574 - 708
Target Start/End: Complemental strand, 4566547 - 4566413
Alignment:
| Q |
574 |
tatacacttacgatattgttttgaatttgaagaatttaaactcgaaagcaaaacaataatgcaaacataacttgctgttgcagcctgcaagacttgctga |
673 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4566547 |
tatacacttacgatattgttttgaatctgaagaatttaaactcgaaagcaaaacaataatgcaaacataacttgctgctgcagcctgcaagacttgctga |
4566448 |
T |
|
| Q |
674 |
tgagtaagacattataggaactttgatgtacgaat |
708 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4566447 |
tgagtaagacattataggaactttgatatacgaat |
4566413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 267 - 412
Target Start/End: Complemental strand, 4568367 - 4568221
Alignment:
| Q |
267 |
tataataaattgactggtcatacaaacagtatgaaaaacaatgataaaatgacacttagattctattcctatgctgaaataaatattac-aacgtaacta |
365 |
Q |
| |
|
|||||||||| | |||||||||| |||| |||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||| |||||||||| |
|
|
| T |
4568367 |
tataataaataggttggtcatacatacagcatgaaaaacaatgataaaataacactttgattctattcctatgataaaataaatattacaaacgtaacta |
4568268 |
T |
|
| Q |
366 |
tttttcattgcaacctcatacaattaagtcgtacatctatctttgtt |
412 |
Q |
| |
|
|| |||||||||| | |||||||||||||||||||| ||||||||| |
|
|
| T |
4568267 |
ttattcattgcaatcatatacaattaagtcgtacatccatctttgtt |
4568221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0220 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0220
Description:
Target: scaffold0220; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 184 - 268
Target Start/End: Complemental strand, 23313 - 23229
Alignment:
| Q |
184 |
aggatagattgtcaggattaacgaataaagaacccattttttaaatgactcatattcgtagggacgaaacacatataaaaaccta |
268 |
Q |
| |
|
||||||||||| |||||||||| |||| | | ||| ||||||||||||||||||| | ||||||||||||||||| ||| |||| |
|
|
| T |
23313 |
aggatagattgacaggattaacaaatacatagaccaatttttaaatgactcatatttgcagggacgaaacacatatcaaagccta |
23229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 31069 - 31012
Alignment:
| Q |
217 |
ccattttttaaatgactcatattcgtagggacgaaacacatataaaaacctataataa |
274 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||| |
|
|
| T |
31069 |
ccattttttaaatgactcatatttgcagggattaaacacatataaaaacatataataa |
31012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 20704503 - 20704433
Alignment:
| Q |
193 |
tgtcaggattaacgaataaagaacccattttttaaatgactcatattcgtagggacgaaacacatataaaa |
263 |
Q |
| |
|
||||| |||||| ||||| || | |||||||||||||||||| |||| | |||||| |||||||||||||| |
|
|
| T |
20704503 |
tgtcaagattaaggaatataggaaccattttttaaatgactcttatttgcagggactaaacacatataaaa |
20704433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 31873260 - 31873324
Alignment:
| Q |
199 |
gattaacgaataaagaacccattttttaaatgactcatattcgtagggacgaaacacatataaaa |
263 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| | |||||| |||||||||||||| |
|
|
| T |
31873260 |
gattaacgaataaaaggaccattttttaaatgacccatatttgcagggactaaacacatataaaa |
31873324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 11291098 - 11291025
Alignment:
| Q |
195 |
tcaggattaacgaata-aagaacccattttttaaatgactcatattcgtagggacgaaacacatataaaaaccta |
268 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||||||||| |||| ||||| || |||||| ||||||| |||| |
|
|
| T |
11291098 |
tcaggattaaggaatacaagaacc-attttttaaatgactcctatttgtaggaactaaacacgtataaaagccta |
11291025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 15645067 - 15645143
Alignment:
| Q |
193 |
tgtcaggattaacgaataaagaacccattttttaaatgactcatattcgtagggacgaaacacatataaaaacctat |
269 |
Q |
| |
|
|||||||||||||||||| | || ||| |||||||||||| || ||| | ||| || |||||||||||||| ||||| |
|
|
| T |
15645067 |
tgtcaggattaacgaatacataaaccaatttttaaatgacccacatttgcaggaactaaacacatataaaagcctat |
15645143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 3652435 - 3652348
Alignment:
| Q |
58 |
aggggtatttttgtccattcacacgtccttttgctgagtcgttcaagtggtcagctaattaacagagccacgtcagtaatctggtgac |
145 |
Q |
| |
|
||||||||||| |||||||| || | ||||||| |||||| |||||||| | || |||||||| ||||| ||||||||| |||||| |
|
|
| T |
3652435 |
aggggtattttggtccattctcatgcccttttgttgagtcattcaagtgattggccaattaacaacgccacatcagtaatcaggtgac |
3652348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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