View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20405_low_5 (Length: 267)

Name: NF20405_low_5
Description: NF20405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20405_low_5
NF20405_low_5
[»] chr8 (2 HSPs)
chr8 (127-222)||(11157750-11157845)
chr8 (135-222)||(11164839-11164926)
[»] chr3 (1 HSPs)
chr3 (163-222)||(4703324-4703383)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 11157845 - 11157750
Alignment:
Q  127 ttgaattgaaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccatt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11157845 ttgaattgaaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccatt 11157750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 11164926 - 11164839
Alignment:
Q  135 aaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccatt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11164926 aaccccaaccctatataaatatcccttctcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccatt 11164839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 4703324 - 4703383
Alignment:
Q  163 tcacattaaggattttagggacctttctttcactggcttccttgttctcctattcccatt 222  Q
    ||||||||| |||||||| |||||||||||||| || |||||  ||||||| ||||||||    
T  4703324 tcacattaacgattttagtgacctttctttcacgggtttcctcattctcctcttcccatt 4703383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University