View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20405_low_8 (Length: 256)
Name: NF20405_low_8
Description: NF20405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20405_low_8 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 11164810 - 11164566
Alignment:
| Q |
12 |
tcatcatcatcaacataatccaatcccttcgaacaagggacaacattagcatccacactaggaacaacattattatcaccaacattaaccttaacattat |
111 |
Q |
| |
|
|||| ||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11164810 |
tcataatcttcaacacaatccaatccctccgaacaagtaacaacattagcatccacactaggaacaacattattatcaccaacattaaccttaacattat |
11164711 |
T |
|
| Q |
112 |
cactactagtagaacctaattccacaacactcttgttatcttcaccttcatttttacaatcaccctttcgttgtttcctccgcgatggaccaaacccaga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11164710 |
cactactagtagaacctaattccacaacactcttgttatcttcaccttcacttttacaatcaccctttcgttgtttcctccgcgatggaccaaacccaga |
11164611 |
T |
|
| Q |
212 |
ataataatagaattcattattatttgaacccgaagccgaacccac |
256 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
11164610 |
ataataatagaattcattactattcgaacccgaagctgaacccac |
11164566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 11157721 - 11157646
Alignment:
| Q |
12 |
tcatcatcatcaacataatccaatcccttcgaacaagggacaacattagcatccacactaggaacaacattattat |
87 |
Q |
| |
|
|||| ||| |||||| |||||||||||| |||||||| ||||||||| |||| |||||| | |||||||||||| |
|
|
| T |
11157721 |
tcataatcttcaacacaatccaatccctccgaacaagtaacaacattaacatcaacactattatcaacattattat |
11157646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 11157654 - 11157624
Alignment:
| Q |
226 |
cattattatttgaacccgaagccgaacccac |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11157654 |
cattattatttgaacccgaagccgaacccac |
11157624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 4703452 - 4703602
Alignment:
| Q |
88 |
caccaacattaaccttaacattatcactactagtagaacctaattccacaacactcttgttatcttcaccttcatttttacaatcaccctttcgttgttt |
187 |
Q |
| |
|
||||||||||||||||||||| || ||||||| || |||||| | ||||||||||||||||||||||| |||||||| |||||| || | |||| |
|
|
| T |
4703452 |
caccaacattaaccttaacatcatgactactacta---cctaatgctacaacactcttgttatcttcaccatcattttt---atcacc---tcttcgttt |
4703542 |
T |
|
| Q |
188 |
cctccgcgatggaccaaacccagaataataatagaattcattattatttgaacccgaagc |
247 |
Q |
| |
|
|| || | ||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
4703543 |
ccctcgtggtggaccaaacccagaataaaaatagaattcattattattcgaacctgaagc |
4703602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University