View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20406_high_1 (Length: 621)
Name: NF20406_high_1
Description: NF20406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20406_high_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 169 - 621
Target Start/End: Complemental strand, 40433827 - 40433375
Alignment:
| Q |
169 |
ctgctagccgtgaagaattaggagatcacatacattgattaagtgatgattgcatgctaacatagattgatagaatattgtttgaatgttaattgattga |
268 |
Q |
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| T |
40433827 |
ctgctagccgtgaagaatcaggagatcacatacattgattaagtgatgattgcatgctaacatagattgatagaatattgtttgaatgttaattgattga |
40433728 |
T |
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| Q |
269 |
gttatgaatttgacgaacttatctactctactagcgcaataaaattgcatgatatattttgccatcattgttttctagtttgatagttgcgattgttaaa |
368 |
Q |
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| T |
40433727 |
gttatgaatttgacgaacttatctactctactagctcaataaaattgcatgacatgttttgccatcattgttttctagtttgatagttgcgattgttaaa |
40433628 |
T |
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| Q |
369 |
ttatttgtcatgcctaagcatgatactttagtaaattctattctagtagtaagtcggtggtaagtgttaaccgtacaaacaccattcttttaatttcctc |
468 |
Q |
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| T |
40433627 |
ttatttgtcatgcctaagcatgatactttagtaaattctattctagtagtaagtcggtggtaagtgttaaccgtacaaacaccattcttttaatttcctc |
40433528 |
T |
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| Q |
469 |
gtcatcaattcatattgattagtgtgttgtacaggtactagaacttctaaagcacgctttggtttcccaaacctctcttacagattggcttttaggaaac |
568 |
Q |
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| T |
40433527 |
gtcatcaattcatattgattagtgtgctgtacaggtactagaacttctaaagcacgctttggtttcccaaacctctcttacagattggcttttaggaaac |
40433428 |
T |
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| Q |
569 |
aaaccaaccctcgaaatgtcacagttcttcccttgtgatgttaaaaacaatag |
621 |
Q |
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| T |
40433427 |
aaaccaaccctcgaaatgtcacggttcttcccttgtgatgttaaaaacaatag |
40433375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 40433976 - 40433895
Alignment:
| Q |
20 |
ttcctcatataattccatatagaaaactgttgttgctattagttgttttaaaaatttgttgttgctattcgctgatgtaaca |
101 |
Q |
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| T |
40433976 |
ttcctcatataatgccatatagaaaactgttgttgctattagttgttttaaaaatttgttgttgctattcgctgatgtaaca |
40433895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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