View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20406_high_13 (Length: 235)
Name: NF20406_high_13
Description: NF20406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20406_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 1452689 - 1452554
Alignment:
| Q |
40 |
tcaaagcatatacaatcaatactatagtaggcaacctgatgtgagatatcgtcattaacaacatatcctaaatcacatgttgatccaaaaaccaa-agaa |
138 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| |||||| |||||||||| ||| |||| |
|
|
| T |
1452689 |
tcaaagcatatacaatcaata-----gtaggcaatctgatgtgacatatcgtcattaacaacacatccta-----------gatccaaaaaacaatagaa |
1452606 |
T |
|
| Q |
139 |
ctcaaattcaataattctgataagcaggcaaaatctaatacttttcaataaa |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1452605 |
ctcaaattcaataattctgataagcaggcaaaatctgatacttttcaataaa |
1452554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 1452094 - 1452046
Alignment:
| Q |
143 |
aattcaataattctgataagcaggcaaaatctaatacttttcaataaaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1452094 |
aattcaataattctgataagcaggcaaaatctgatacttttcaataaaa |
1452046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University