View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20406_high_15 (Length: 218)

Name: NF20406_high_15
Description: NF20406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20406_high_15
NF20406_high_15
[»] scaffold0667 (1 HSPs)
scaffold0667 (2-158)||(4820-4976)
[»] chr2 (16 HSPs)
chr2 (94-201)||(9357612-9357719)
chr2 (12-166)||(9283819-9283973)
chr2 (2-158)||(9321313-9321469)
chr2 (2-166)||(9060764-9060928)
chr2 (22-152)||(8573142-8573272)
chr2 (12-158)||(10353468-10353614)
chr2 (13-158)||(7115276-7115421)
chr2 (94-163)||(9292357-9292426)
chr2 (2-166)||(9316365-9316529)
chr2 (13-158)||(10348139-10348284)
chr2 (22-158)||(10336198-10336337)
chr2 (94-158)||(9329028-9329092)
chr2 (96-158)||(10372301-10372363)
chr2 (2-153)||(9274852-9275000)
chr2 (11-156)||(12018515-12018660)
chr2 (92-152)||(11987124-11987184)
[»] chr4 (1 HSPs)
chr4 (12-158)||(26575220-26575366)
[»] chr3 (1 HSPs)
chr3 (11-158)||(37462844-37462991)
[»] chr8 (1 HSPs)
chr8 (93-156)||(41966362-41966425)
[»] chr1 (4 HSPs)
chr1 (95-153)||(29452955-29453013)
chr1 (2-156)||(29467429-29467582)
chr1 (95-152)||(29442970-29443027)
chr1 (99-156)||(29423702-29423759)


Alignment Details
Target: scaffold0667 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 4820 - 4976
Alignment:
2 tacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagaga 101  Q
    ||||||||  ||||||||| |||||| ||||| |||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||    
4820 tacggcatagtaggaattattttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtagagagactaaccaagaga 4919  T
102 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 158  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
4920 gtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 4976  T

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Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 9357612 - 9357719
Alignment:
94 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcggagaatgtta 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9357612 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcggagaatgtta 9357711  T
194 gggatagg 201  Q
    ||||||||    
9357712 gggatagg 9357719  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 9283973 - 9283819
Alignment:
12 taggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggag 111  Q
    ||||||||| |||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||| |||||| |||| ||||||||||| ||||||    
9283973 taggaattattttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtagagatactagccaagagattcggaggag 9283874  T
112 tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccg 166  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
9283873 tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcatacaccgccg 9283819  T

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Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 9321313 - 9321469
Alignment:
2 tacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagaga 101  Q
    |||||||| || ||||||| |||||| ||||||||| |  |||| ||||||||||||||||||| |||||||| ||| | | ||||| ||||||||||||    
9321313 tacggcatactgggaattattttccacgagtttgttatagagctgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagaga 9321412  T
102 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 158  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
9321413 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcata 9321469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 166
Target Start/End: Complemental strand, 9060928 - 9060764
Alignment:
2 tacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagaga 101  Q
    |||||||| || ||||||  |||||| ||||||||||||||||||||||| ||||||||||||| |||||||  ||||| | |||  | |||||||| ||    
9060928 tacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaataaccaagtga 9060829  T
102 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccg 166  Q
    |||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |||||||    
9060828 ttctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcatataccgccg 9060764  T

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Target: chr2; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 8573272 - 8573142
Alignment:
22 tttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggagtttgtaatcg 121  Q
    |||||| |||||||||||||||||||||||| |||||||||||| |||||||||||| | | ||| ||||||||||||||||| ||||||||||||||||    
8573272 tttccacgagtttgttttcaagctaaagagtgtgacatgtgaatcataaaaagggttatgttgagtgactaaccaagagattcggaggagtttgtaatcg 8573173  T
122 ccggttaaaggatcaaaaccgaagccgtgaa 152  Q
     |||||||  |||||||||||||||||||||    
8573172 gcggttaatagatcaaaaccgaagccgtgaa 8573142  T

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Target: chr2; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 10353468 - 10353614
Alignment:
12 taggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggag 111  Q
    ||||||||| |||||| ||||||||||||||||| |||||||||||||||| || |||||||||||||| ||||  ||  ||   |||||||||||||||    
10353468 taggaattactttccatgagtttgttttcaagctgaagagtctgacatgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggag 10353567  T
112 tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 158  Q
    |||||||||||||| || || ||||||||||||||| ||||||||||    
10353568 tttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcata 10353614  T

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Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 7115421 - 7115276
Alignment:
13 aggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggagt 112  Q
    |||||| | |||||| |||||||||||||| || ||||||||||  ||||||| |||||||| ||||  | ||  |  |||||||||||||||||| |||    
7115421 aggaatcattttccacgagtttgttttcaaactgaagagtctgatctgtgaatcataaaaagagtttggtggattgcataaccaagagattctgagaagt 7115322  T
113 ttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 158  Q
    ||||||||  | |||||||||||||||||||||||||||| |||||    
7115321 ttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcata 7115276  T

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Target: chr2; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 9292357 - 9292426
Alignment:
94 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccg 163  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
9292357 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacaccg 9292426  T

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Target: chr2; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 2 - 166
Target Start/End: Original strand, 9316365 - 9316529
Alignment:
2 tacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagaga 101  Q
    |||||||| || ||||||  |||||| ||||||||||||||||||||||| ||||||||||||| |||||||| |   |    |  | | | |||||| |    
9316365 tacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaagagcaatgaccatcggccatccaagaaa 9316464  T
102 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccg 166  Q
    ||||||||||||||||||| || ||| | |||||||||||||||||||||||||||| |||||||    
9316465 ttctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcatataccgccg 9316529  T

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Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 10348139 - 10348284
Alignment:
13 aggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggagt 112  Q
    ||||||||  ||||| ||||||||||||||||| |||||||| || |||| || |||||||||||| | ||||  || |||   ||| ||||||||||||    
10348139 aggaattatcttccatgagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttctgtagatcgagtaagtgagaaattctgaggagt 10348238  T
113 ttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 158  Q
    |||||||| |||| ||   |||||||||||||||||||||||||||    
10348239 ttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 10348284  T

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Target: chr2; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 10336198 - 10336337
Alignment:
22 tttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaag---ggttttttagagagactaaccaagagattctgaggagtttgtaa 118  Q
    |||||| |||||||||||| |||| |||||| | | |||||||| || |||||   ||| || ||||  ||| |||||||||||||||||||||||||||    
10336198 tttccaagagtttgttttcgagctgaagagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaagagattctgaggagtttgtaa 10336297  T
119 tcgccggttaaaggatcaaaaccgaagccgtgaacgcata 158  Q
    ||| ||| ||| | |||||||||||| |||||||||||||    
10336298 tcggcggataatgaatcaaaaccgaatccgtgaacgcata 10336337  T

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Target: chr2; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 9329028 - 9329092
Alignment:
94 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 158  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||    
9329028 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcata 9329092  T

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Target: chr2; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 10372301 - 10372363
Alignment:
96 aagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 158  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||    
10372301 aagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcata 10372363  T

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Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 9274852 - 9275000
Alignment:
2 tacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagaga 101  Q
    |||||||| || ||||||| |||||| ||||||||||||||||| |||||||| |||||||| | |   |||| ||  | || |    ||||||| ||||    
9274852 tacggcatactgggaattattttccacgagtttgttttcaagctgaagagtctcacatgtgattca---aaagagtaatgtatatcagctaaccatgaga 9274948  T
102 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaac 153  Q
    ||||||| ||||| |||||||||| ||||||||||||||| || ||||||||    
9274949 ttctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 12018660 - 12018515
Alignment:
11 ctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgagga 110  Q
    ||||||| || |||||| ||||| |||||  || || |||||||||||| ||||| | ||  | |||| | ||||   || ||||||||||||||||  |    
12018660 ctaggaagtactttccacgagttcgtttttgaggtatagagtctgacatatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgacaa 12018561  T
111 gtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 156  Q
    |||| |||||   ||  |||||||||||||||||||||| ||||||    
12018560 gtttataatcagaggacaaaggatcaaaaccgaagccgtaaacgca 12018515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 11987184 - 11987124
Alignment:
92 aaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 152  Q
    |||||||||||||||| |||||||||||||   |  ||||||||||| ||||| |||||||    
11987184 aaccaagagattctgatgagtttgtaatcggatgaaaaaggatcaaagccgaatccgtgaa 11987124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 26575220 - 26575366
Alignment:
12 taggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggag 111  Q
    ||||||||| |||||| ||||||||||||||||| |||||||| ||||||| || |||||||||||||| ||||  ||  ||  ||||||||||||||||    
26575220 taggaattattttccatgagtttgttttcaagctgaagagtctaacatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggag 26575319  T
112 tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 158  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||    
26575320 tttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcata 26575366  T

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Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 37462844 - 37462991
Alignment:
11 ctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgagga 110  Q
    ||||||| || |||||| |||||||||||  |||| |||||||| ||||||| || |||||||||||||| ||||  ||  | |||||||||||||||||    
37462844 ctaggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctgagga 37462943  T
111 gtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 158  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
37462944 gtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcata 37462991  T

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Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 41966425 - 41966362
Alignment:
93 accaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 156  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||||    
41966425 accaagagattctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca 41966362  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 29453013 - 29452955
Alignment:
95 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaac 153  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||    
29453013 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 29452955  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 156
Target Start/End: Complemental strand, 29467582 - 29467429
Alignment:
2 tacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagaga 101  Q
    |||||||| |||| || || |||||||||||| |||||| |||| |||||| | |||||||||| || |    |||  | |||   ||| || |||||||    
29467582 tacggcatactagaaagtactttccaggagttcgttttcgagctgaagagtgtaacatgtgaatcatgagtgtggtggtgtagtttgacgaaacaagaga 29467483  T
102 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 156  Q
    ||||||| |||||||||||  ||||||| ||||||||||||||||||||||||||    
29467482 ttctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca 29467429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 29443027 - 29442970
Alignment:
95 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 152  Q
    ||||||||||||| |||||||||||||  ||| || ||||||||||||||||||||||    
29443027 caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa 29442970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 29423702 - 29423759
Alignment:
99 agattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 156  Q
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29423702 agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgca 29423759  T

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