View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20406_low_11 (Length: 304)
Name: NF20406_low_11
Description: NF20406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20406_low_11 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 30750468 - 30750771
Alignment:
| Q |
1 |
caccatgggagaaccatctaatcttcacctcccactaagaagattggatgcatgtgttttagattgtttgtgcctcaaatttgtaattaaaaaccagaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750468 |
caccatgggagaaccatctaatcttcacctcccactaagaaagttggatgcatgtgttttagattgtttgtgcctcaaatttgtaattaaaaaccagaat |
30750567 |
T |
|
| Q |
101 |
tataaacactcctatccatatttcttatcctctcactcgacctaaagaagatttaaatgttaatgggtgagcaagaagcaaggaattggtgcaaggattg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30750568 |
tataaacactcctatccatatttcttaccgtctcactcgacctaaagaagatttaaatgttaatgggtgaggaagaagcaaggaattggtgcaaggattc |
30750667 |
T |
|
| Q |
201 |
aagttagggtttcaagaatttagagaagctatattatttattgatgcttgttggggtatgttcttgttagcgatccttgttcttggtataccccttttgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30750668 |
aagttagggtttcaagaatttagagaagctatattatttattgatgcttgttggggtatgttcttgttagtgatccttgttcttggtataccccttttgc |
30750767 |
T |
|
| Q |
301 |
agtt |
304 |
Q |
| |
|
|||| |
|
|
| T |
30750768 |
agtt |
30750771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 30760552 - 30760659
Alignment:
| Q |
191 |
gcaaggattgaagttagggtttcaagaatttagagaagctatattatttattgatgcttgttggggtatgttcttgttagcgatccttgttcttggtata |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
30760552 |
gcaaggattgaagttagggtttcaagaatttagagaagctatattatttattgatgcttgttggggtatgttctatttagtgatccttgttcttggtata |
30760651 |
T |
|
| Q |
291 |
cccctttt |
298 |
Q |
| |
|
|||||||| |
|
|
| T |
30760652 |
cccctttt |
30760659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 241500 - 241546
Alignment:
| Q |
152 |
tttaaatgttaatgggtgagcaagaagcaaggaattggtgcaaggat |
198 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
241500 |
tttaaatgttgatgggtgaggaagaagcaaggaatttgtgcaaggat |
241546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 14575875 - 14575829
Alignment:
| Q |
152 |
tttaaatgttaatgggtgagcaagaagcaaggaattggtgcaaggat |
198 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
14575875 |
tttaaatgttgatgggtgaggaagaagcaaggaatttgtgcaaggat |
14575829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University