View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20406_low_14 (Length: 246)
Name: NF20406_low_14
Description: NF20406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20406_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 24066007 - 24066235
Alignment:
| Q |
1 |
tttcatatagaagagtttgagaaagtgagaatatgaaaacctgccaaggcgttgagtccattgaaacaagttttgaagaaagaagttcctccattgtgct |
100 |
Q |
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| T |
24066007 |
tttcatatataagagtttgagaaagtgagaatatgaaaacctgccaaggcgttgagtccattgaaacaagttttgaagaaagaagttcctccattgtgct |
24066106 |
T |
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| Q |
101 |
gcctagaatttgaagaaacttggagctgtctttctgtctccatattctctttagataattagttaataatgagcaatctttgttaactctaaatgaaatg |
200 |
Q |
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| T |
24066107 |
gcctagaatttgaagaaacttggagctgtctttcagtctccatattctctttagataattagttaataatgagcaatctttgttaactctaaatgaaatg |
24066206 |
T |
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| Q |
201 |
taataattggttaatatagtggcatagat |
229 |
Q |
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| T |
24066207 |
taataattggttaatatagtggcatagat |
24066235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 24018617 - 24018743
Alignment:
| Q |
39 |
acctgccaaggcgttgagtccattgaaacaagttttgaagaaagaagttcctccattgtgctgcctagaatttgaagaaacttggagctgtctttctgtc |
138 |
Q |
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| T |
24018617 |
acctgccaaggcattgagtccattgaaacaagttttgataaaagaggttccttctttgtgctgccctgaatttgatgaaacttggagctgcctttctatc |
24018716 |
T |
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| Q |
139 |
tccatattctctttagataattagtta |
165 |
Q |
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| T |
24018717 |
tccattttctctctagataattagtta |
24018743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 24075918 - 24076027
Alignment:
| Q |
38 |
aacctgccaaggcgttgagtccattgaaacaagttttgaagaaagaagttcctccattgtgctgcctagaatttgaagaaacttggagctgtctttctgt |
137 |
Q |
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|||||||||||||||||||||||| |||||||||||| | ||||| |||||| |||| |||||| ||||| ||||| |||||||| |||||||| |
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| T |
24075918 |
aacctgccaaggcgttgagtccatggaaacaagttttagaaaaagaggttccttcattctgctgctctgaatt---cgaaacctggagctggctttctgt |
24076014 |
T |
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| Q |
138 |
ctccatattctct |
150 |
Q |
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|||||||||||| |
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| T |
24076015 |
gtccatattctct |
24076027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 23247306 - 23247346
Alignment:
| Q |
37 |
aaacctgccaaggcgttgagtccattgaaacaagttttgaa |
77 |
Q |
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| T |
23247306 |
aaacctgtcaaggcattgagtccattgaaacaagttttgaa |
23247346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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