View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20406_low_5 (Length: 503)
Name: NF20406_low_5
Description: NF20406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20406_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 65 - 496
Target Start/End: Complemental strand, 56437173 - 56436748
Alignment:
| Q |
65 |
aaatgtgaatcaagtaacaaaccatgattcaggggattgataaagagaagcggaagcaccaaagcaagaagcaagcatgtcagtgttgatgacaccagga |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56437173 |
aaatgtgaatcaagtaacaaaccatgattcaggggattgataaagagaagcggaagcaccaaagcaagaagcaagcatgtcagtgttgatgacaccagga |
56437074 |
T |
|
| Q |
165 |
ttgagtgcgacaacagccattccttgtggtaactctttagctacagactttgtgagtccttcaatagcccatttggatgcacagtaaggagcaacaagtg |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56437073 |
ttgagtgcgacaacagccattccttgtggtaactctttagctacagactttgtgagtccttcaatagcccatttggatgcacagtaaggagcaacaagtg |
56436974 |
T |
|
| Q |
265 |
ctgcacccgatcttccccaaccagaagacaagttaactataataccttctcctcctcctcctccattgttgatcatgagagggatgaaatgtctcaacac |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
56436973 |
ctgcacccgatcttccccaaccagaagacaagttaactataataccttctcctc------ctccattgttgatcatgagagggatgaaatgtctcaacac |
56436880 |
T |
|
| Q |
365 |
attggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgttgatagtacctgcgctgttc |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56436879 |
attggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgttgatagtacctgcgctgttc |
56436780 |
T |
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| Q |
465 |
acaataacatcaggtggaccccccttcatctc |
496 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
56436779 |
acaataacatcaggtggaccccccttcatctc |
56436748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 86 - 445
Target Start/End: Original strand, 24889911 - 24890270
Alignment:
| Q |
86 |
ccatgattcaggggattgataaagagaagcggaagcaccaaagcaagaagcaagcatgtcagtgttgatgacaccaggattgagtgcgacaacagccatt |
185 |
Q |
| |
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||||||||| |||||||||||||| || | |||||||||| |||| |||||||||||||||||||||||||| || ||||| ||||| || || |||||| |
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| T |
24889911 |
ccatgattctggggattgataaagcgatgaggaagcaccatagcatgaagcaagcatgtcagtgttgatgactcctggattcagtgccactactgccatt |
24890010 |
T |
|
| Q |
186 |
ccttgtggtaactctttagctacagactttgtgagtccttcaatagcccatttggatgcacagtaaggagcaacaagtgctgcacccgatcttccccaac |
285 |
Q |
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|||| || ||||||| ||| |||||||| |||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||| |
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| T |
24890011 |
cctttaggcaactcttcagcaacagacttagtgagtccttcaattgcccatttggatgcacaataaggtgctacaagtgctgcacctgatcttccccaac |
24890110 |
T |
|
| Q |
286 |
cagaagacaagttaactataatacct-tctcctcctcctcctccattgttgatcatgagagggatgaaatgtctcaacacattggcagttcctttcaagt |
384 |
Q |
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||||||||| ||| ||||| || ||| | || | || | | ||| |||||| ||||| ||||| || ||||||||||||||||| |||||||||| |
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| T |
24890111 |
cagaagacatgttcactattatccctcccatttcattcttgttc-ttggcgatcattagaggaatgaagtgcctcaacacattggcagtacctttcaagt |
24890209 |
T |
|
| Q |
385 |
ttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
445 |
Q |
| |
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| |||||||||||| |||||||||||| ||| ||||| ||||||||||| |||||||||| |
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|
| T |
24890210 |
tggtatccatcaccgaatcaaactcttcagagggaacctcccacatcttactgttcttgtt |
24890270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 86 - 445
Target Start/End: Original strand, 26560452 - 26560811
Alignment:
| Q |
86 |
ccatgattcaggggattgataaagagaagcggaagcaccaaagcaagaagcaagcatgtcagtgttgatgacaccaggattgagtgcgacaacagccatt |
185 |
Q |
| |
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||||||||| ||| || |||||||||| | |||||||||| ||||| |||||||||||| |||||||||||| || ||||||||||| || || |||||| |
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| T |
26560452 |
ccatgattctgggaatcgataaagagatgaggaagcaccatagcaaaaagcaagcatgttagtgttgatgacccctggattgagtgccaccactgccatt |
26560551 |
T |
|
| Q |
186 |
ccttgtggtaactctttagctacagactttgtgagtccttcaatagcccatttggatgcacagtaaggagcaacaagtgctgcacccgatcttccccaac |
285 |
Q |
| |
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||| || ||||||| | | |||||||| || ||||||||||| |||||||||||| |||||||||| || |||||||| ||| | ||||||||||||| |
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| T |
26560552 |
actttaggcaactcttcaacaacagacttggtaagtccttcaattgcccatttggatacacagtaaggtgctacaagtgcagcaactgatcttccccaac |
26560651 |
T |
|
| Q |
286 |
cagaagacaagttaactataatacct-tctcctcctcctcctccattgttgatcatgagagggatgaaatgtctcaacacattggcagttcctttcaagt |
384 |
Q |
| |
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| ||||||| ||| ||||| || ||| ||| || | || | ||| || | ||| | ||| ||||| | |||||||||||||||| |||||||||| |
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| T |
26560652 |
ctgaagacatgttcactattatccctccctcttcatact-ttttatttttaaccatcaaaggtatgaagggcctcaacacattggcagcacctttcaagt |
26560750 |
T |
|
| Q |
385 |
ttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
445 |
Q |
| |
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| ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |
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|
| T |
26560751 |
tggtatccatcaccaaatcaaactcttcagacggaacctcccacatcttgttgttcttgtt |
26560811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 86 - 278
Target Start/End: Complemental strand, 26563135 - 26562943
Alignment:
| Q |
86 |
ccatgattcaggggattgataaagagaagcggaagcaccaaagcaagaagcaagcatgtcagtgttgatgacaccaggattgagtgcgacaacagccatt |
185 |
Q |
| |
|
||||||||| ||||||||||| ||||| | ||||||||| ||||||| ||||| |||| |||| ||||||| || | ||||||||| | || |||||| |
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| T |
26563135 |
ccatgattctggggattgatagagagatgaggaagcaccgtagcaagacgcaagtatgttagtgctgatgactcctgtattgagtgccatcactgccatt |
26563036 |
T |
|
| Q |
186 |
ccttgtggtaactctttagctacagactttgtgagtccttcaatagcccatttggatgcacagtaaggagcaacaagtgctgcacccgatctt |
278 |
Q |
| |
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|||| || ||||||| ||| |||||||| |||||||||||||| |||||||||||||| ||||||| || || ||||| ||||| |||||| |
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| T |
26563035 |
cctttaggaaactcttcagcaacagacttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacgagtgcagcacctgatctt |
26562943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 348 - 445
Target Start/End: Complemental strand, 26562900 - 26562803
Alignment:
| Q |
348 |
atgaaatgtctcaacacattggcagttcctttcaagtttgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgtt |
445 |
Q |
| |
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||||| || |||||||||||| || | ||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| |
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| T |
26562900 |
atgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatcaaactcttcagacaaaacctcccacatcttgttgttcttgtt |
26562803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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