View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20406_low_7 (Length: 321)
Name: NF20406_low_7
Description: NF20406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20406_low_7 |
 | |
|
| [»] scaffold0667 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0667 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 304
Target Start/End: Complemental strand, 4716 - 4417
Alignment:
| Q |
5 |
tttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgctg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
4716 |
tttaacctaacacttgaaattttcaatgaggttcctcttcctgacgaaataggtgaagaagaggttaattcaaatgacagtgttgaaattgatgttgctg |
4617 |
T |
|
| Q |
105 |
ctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaact |
204 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| || | ||||||||||||||||| |
|
|
| T |
4616 |
ctttgggaggatgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaaagatagttggtgtaaact |
4517 |
T |
|
| Q |
205 |
ttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgttagaaggaattgag |
304 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
4516 |
ttttactatgatgaaatcgtgtgtcacttcacatttgaaatcttcgagtcctttatgttattctagtgatggaagtaaggttctgattgaaggaattgag |
4417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 30)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 99 - 303
Target Start/End: Original strand, 8573496 - 8573700
Alignment:
| Q |
99 |
ttgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtg |
198 |
Q |
| |
|
|||||| |||||| || |||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||| || ||| ||||||||||| |
|
|
| T |
8573496 |
ttgctgttttgggtgggtgtctttgtatgtctgtgaattatgaaaccactgaaattgatgtttgggtgatgaaagaatatggttctagagatagttggtg |
8573595 |
T |
|
| Q |
199 |
taaactttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgttagaagga |
298 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8573596 |
taaactttttactttcgttaaatcgtgtttcactccacattttaaatcttcgaggcctttaggttattctagtgatggaagtaaggttctgttggaagga |
8573695 |
T |
|
| Q |
299 |
attga |
303 |
Q |
| |
|
||||| |
|
|
| T |
8573696 |
attga |
8573700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 304
Target Start/End: Original strand, 9065489 - 9065789
Alignment:
| Q |
5 |
tttaacctaacacttgaaattttcaat-gtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgct |
103 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||||| ||||||| ||||||| | | || ||||||||| ||||||||| || |||| ||||||| |
|
|
| T |
9065489 |
tttaacctcacacttgaaattttcaattgaggttccccttcctgctgaaataagaggtgaagaggttaatagtaatgagagttttcaaatgactgttgct |
9065588 |
T |
|
| Q |
104 |
gctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaac |
203 |
Q |
| |
|
| ||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
9065589 |
gttttgggagggtgtctttgtatgattttgaattatgaaactactaatattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaac |
9065688 |
T |
|
| Q |
204 |
tttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgttagaaggaattga |
303 |
Q |
| |
|
|||||||| |||| ||||| |||||| ||||||||||| | | |||| ||| |||||||||| |||||||||||||||||||||| |||| |||||| |
|
|
| T |
9065689 |
tttttactttggtcaaatcttgtttccattcacatttgacagcttcgaggcctctaggttattccggtgatggaagtaaggttctgttggaagcaattga |
9065788 |
T |
|
| Q |
304 |
g |
304 |
Q |
| |
|
| |
|
|
| T |
9065789 |
g |
9065789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 96 - 304
Target Start/End: Complemental strand, 16269243 - 16269035
Alignment:
| Q |
96 |
atgttgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttg |
195 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |||| | ||| |||||||| |
|
|
| T |
16269243 |
atgttgctgttttgggaggatgtctttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatgaaagagtatggatatagagatagttg |
16269144 |
T |
|
| Q |
196 |
gtgtaaactttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgttagaa |
295 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||||| || || | |||| ||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
16269143 |
gtgcaaactttttaccttggttaaatcgtgtttcacttcacatttgcgatattcaaatcctataggttattctagtgatggaagtaaggttctctttgaa |
16269044 |
T |
|
| Q |
296 |
ggaattgag |
304 |
Q |
| |
|
||||||||| |
|
|
| T |
16269043 |
ggaattgag |
16269035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 291
Target Start/End: Complemental strand, 10348026 - 10347744
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||| ||||| |||||||||| |
|
|
| T |
10348026 |
cgtttaacctcacacttgaaattttcaatgaggttcctcttcctgatgaaataggtgaagaag---ttaatgg---tgagagttttgaagttcatgttgc |
10347933 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
|| ||||||||| ||||||||||| | ||| ||||| || ||||||||||||||| ||||| ||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
10347932 |
tgttttgggagggtgtctttgtatcactgtcgattataaagatactaaaattgatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaa |
10347833 |
T |
|
| Q |
203 |
ctttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgtt |
291 |
Q |
| |
|
||||||||||||| | | ||||||||| || || |||||||| || || || || ||||||||||||||||||||||||||||||| |
|
|
| T |
10347832 |
ctttttactatggctgagtcgtgtttcgatttacctttgaaattgttgaggcccatatgttattctagtgatggaagtaaggttctgtt |
10347744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 3 - 295
Target Start/End: Original strand, 9284085 - 9284377
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
|||||||||||||||| || ||||||| | |||||||||||||| || ||| | | || ||||| ||| ||| ||||| |||| || | ||||| |
|
|
| T |
9284085 |
cgtttaacctaacactagaggttttcaaagaggttcctcttcctgctgttataagaggtgaggaggtaaataataatcagagttttgaccttgaggttgc |
9284184 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
|| ||| ||||| |||||| ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
9284185 |
tgttttaggaggttgtcttagtatgattgtgaattatcaaactactaaaattgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaaa |
9284284 |
T |
|
| Q |
203 |
ctttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgttagaa |
295 |
Q |
| |
|
|||||||| |||||||||| | ||||||| || ||||||||| | || ||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
9284285 |
atttttactttggttaaatcacggttcactttacgtttgaaatctttgaggcctttaggttattctagtgatggtagtaaggttctattagaa |
9284377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 278
Target Start/End: Original strand, 12006013 - 12006288
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||||||| |||||||||||||| | | || ||||||| || ||| |||| |||||||| ||||||| |
|
|
| T |
12006013 |
cgtttaacctaacacttgaggttttcaacgaggttccttttcctgatgaaataagaggtgaagaggttatttgtaatcggagttttgaaattaatgttgc |
12006112 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
|| ||||||||| ||||||||| |||||||||||||| |||||||||| |||||||| ||||||||||||||||||| || || ||||||||||||||| |
|
|
| T |
12006113 |
tgatttgggagggtgtctttgtttgattgtgaattatcaaactactaagattgatgtatgggtgatgaaagaatatggttgtaaagatagttggtgtaaa |
12006212 |
T |
|
| Q |
203 |
ctttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaa |
278 |
Q |
| |
|
||||||||| || | |||||||||| || || | ||| ||| | ||| |||||||||||||| |||||||||| |
|
|
| T |
12006213 |
ctttttactttgatgggatcgtgtttcgttttacctgtgatatctttgatccctttaggttattcaagtgatggaa |
12006288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 291
Target Start/End: Complemental strand, 9328831 - 9328558
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||| |||||||| |||||| |
|
|
| T |
9328831 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgt------------tga---taatagtaataagagttttgaaattgatgttga |
9328747 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
|| ||||||||| |||||||| |||| | ||||||||||||||||| |||||||||| |||||||||||| |||||| | ||| ||||||||||||||| |
|
|
| T |
9328746 |
tgttttgggagggtgtctttgcatgactttgaattatgaaactactgaaattgatgtttgggtgatgaaacaatatggatatagagatagttggtgtaaa |
9328647 |
T |
|
| Q |
203 |
ctttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgtt |
291 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||||||| | || ||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
9328646 |
ctttttactatggttaaatcgtgtttccatttacctttgaaatctttgaggcctttaggttatttgagtgatggaaaaaaggttttgtt |
9328558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 9061032 - 9061329
Alignment:
| Q |
5 |
tttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaa------ttcgaatgagagtgttgaaattcatg |
98 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||| | |||| ||| | || |||||||| | |||| |||| || |||||| || |
|
|
| T |
9061032 |
tttaacctcacacttgaaattttcaatgaggttcctcttcccgttgaattagaaggtgaagaggttaacagtaatagtaatgggagttttaaaattcgtg |
9061131 |
T |
|
| Q |
99 |
ttgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtg |
198 |
Q |
| |
|
|||||| |||||| || |||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||| |||| | ||| ||||||||||| |
|
|
| T |
9061132 |
ttgctgttttgggtgggtgtctttgcatgtctgtgaattatgaagctactaaaattgatgtttgggtgatgaaagactatggatctagagatagttggtg |
9061231 |
T |
|
| Q |
199 |
taaactttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgttagaag |
296 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |||| | | | || || ||| ||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
9061232 |
taaactttttactttggttaaatcgtgtttcaattcacctttggactttttgaggccgttatgttattctagtgatggaggtaaggttctgttggaag |
9061329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 291
Target Start/End: Complemental strand, 10353350 - 10353068
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||| | ||||| | | ||||| || |||||| |||||| |
|
|
| T |
10353350 |
cgtttaacctaacacttgagactttcaatgaggttcctcttcctgatgaaatagaggaagaag---ttaat---agtaagagttttaaaattcgtgttgc |
10353257 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||| | ||| || |||||||||||| |
|
|
| T |
10353256 |
tgctttaggagggtgtctttgtatgattgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaa |
10353157 |
T |
|
| Q |
203 |
ctttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgtt |
291 |
Q |
| |
|
||||||||| |||||||||| | |||| || || |||| |||| | || | |||||||||||| |||||| ||| |||||| |||| |
|
|
| T |
10353156 |
ctttttactgtggttaaatcttctttcgatttacctttgcaatctttgaggcttttaggttattcgagtgatagaaaaaaggttttgtt |
10353068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 97 - 291
Target Start/End: Complemental strand, 9292090 - 9291902
Alignment:
| Q |
97 |
tgttgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttgg |
196 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| || ||| ||||||||| |
|
|
| T |
9292090 |
tgttgctgttttaggagagtgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagatagttgg |
9291991 |
T |
|
| Q |
197 |
tgtaaactttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgtt |
291 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||| ||||||||| | || |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
9291990 |
tgtaaactttttactttggttaaatcgcggttcac------tttgaaatctttgaggcctttatgttattctagggatggaagtaaggttctgtt |
9291902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 12012441 - 12012667
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| |||||||||||||| | | || ||||||| || ||| ||| |||||||| |||||| |
|
|
| T |
12012441 |
cgtttaacctaacacttgagcttttcaatgaggttccatttcctgatgaaatatgaggtgaagaggttatttgtaatagtagttttgaaatttctgttgc |
12012540 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||| || |||||||||| |||||||| | ||||||||||||||||| || || ||||||||||||||| |
|
|
| T |
12012541 |
tgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaa |
12012640 |
T |
|
| Q |
203 |
ctttttactatggttaaatcgtgtttc |
229 |
Q |
| |
|
||||||||| |||| ||||||||||| |
|
|
| T |
12012641 |
ctttttactttggtggaatcgtgtttc |
12012667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 288
Target Start/End: Complemental strand, 9316263 - 9315981
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaag-at-gaggttaattcgaa---tgagagtgttgaaattcat |
97 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||| || ||||||||| | ||||||| || ||||| | |
|
|
| T |
9316263 |
cgtttaacctaacacttgagattttcaatgtggttcctcttcctgctgaaataga--aagtatagaggttaatagtgagtgtgagagttttcaaattgct |
9316166 |
T |
|
| Q |
98 |
gttgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggt |
197 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| |||||||| |||||||||||| |||||| |||||||||||||| |||| | |||||||| |
|
|
| T |
9316165 |
gttgctgttttgggagggtgtctttgtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactatg------gatctagttggt |
9316072 |
T |
|
| Q |
198 |
gtaaactttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttct |
288 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||| | |||||| | | || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
9316071 |
gtaaactttttactttggttaattcatgtttcactttatctttgaattttttgaagcctttaggttattctagtgacggaagtaaggttct |
9315981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 77 - 291
Target Start/End: Complemental strand, 9321152 - 9320941
Alignment:
| Q |
77 |
aatgagagtgttgaaattcatgttgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaat |
176 |
Q |
| |
|
||||||||| |||||||| |||||| || ||||||||| |||||||| |||| | |||| |||||||| ||| ||||||| |||||||||||||||| |
|
|
| T |
9321152 |
aatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaat |
9321056 |
T |
|
| Q |
177 |
atgattttagggatagttggtgtaaactttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatgg |
276 |
Q |
| |
|
||| || ||| |||||||||||||||||||||||||||||||||||||||| | || || ||||||||| | || |||||||||||||| |||||||| |
|
|
| T |
9321055 |
atggttctagagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttgaaatctttgaggcctttaggttattcgagtgatgg |
9320956 |
T |
|
| Q |
277 |
aagtaaggttctgtt |
291 |
Q |
| |
|
|| |||||| |||| |
|
|
| T |
9320955 |
aaaaaaggttttgtt |
9320941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 10372099 - 10371886
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
||||||||||| ||||||| | |||||||| ||||||||| ||||||||| |||||||||| | ||||| ||| ||| ||||||||| |||||| |
|
|
| T |
10372099 |
cgtttaacctatcacttgagactttcaatgaggttcctctccctgatgaactaggtgaagaag---ttaatagtaat---agttttgaaattcgtgttgc |
10372006 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
|| ||| ||||| ||||||||||||| |||| ||||| |||||||||| ||||| | ||||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
10372005 |
tgttttaggagggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtgtaaa |
10371906 |
T |
|
| Q |
203 |
ctttttactatggttaaatc |
222 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
10371905 |
ctttttactttggttaaatc |
10371886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 77 - 228
Target Start/End: Complemental strand, 10336017 - 10335866
Alignment:
| Q |
77 |
aatgagagtgttgaaattcatgttgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaat |
176 |
Q |
| |
|
||||||||| || ||||| | |||||| ||||||||| ||||||||| || |||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10336017 |
aatgagagttttaaaatttctattgctgttttgggagggtgtctttgtttgcctgtgaattatcaaactactaaaattgatgtttgggtgatgaaagaat |
10335918 |
T |
|
| Q |
177 |
atgattttagggatagttggtgtaaactttttactatggttaaatcgtgttt |
228 |
Q |
| |
|
||| | ||| |||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
10335917 |
atggctgtagagatagttggtgtaaacattttactttggttaaatcgtgttt |
10335866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 9364869 - 9364662
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
|||||||| ||||||| || |||||||||| ||||| |||||||| ||||||||||| | | |||| || ||||||| ||||||| ||||||| |
|
|
| T |
9364869 |
cgtttaacttaacactagagattttcaatgaagttccacttcctga---aataggtgaagttaa---taatgagagtgagagttttgaaatcgatgttgc |
9364776 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
| ||||||||| |||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
9364775 |
ggttttgggagggtgtcttagtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaa |
9364676 |
T |
|
| Q |
203 |
ctttttactatggt |
216 |
Q |
| |
|
| |||||| |||| |
|
|
| T |
9364675 |
ttgtttactttggt |
9364662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 288
Target Start/End: Original strand, 7115633 - 7115825
Alignment:
| Q |
99 |
ttgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtg |
198 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||| | ||| || || ||||| |
|
|
| T |
7115633 |
ttgctgttttgggagggtgtctttgtatgattgtgaattatagaactactaaaacagatgtttgggtgatgaaacaatatggatctagagacagctggtg |
7115732 |
T |
|
| Q |
199 |
taaactttttactatggttaaatcgtgtttcacttcacatttgaa---atcgtcgattcctttaggttattctagtgatggaagtaaggttct |
288 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| || | ||||| || || | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
7115733 |
taaactttttacattggttaattcgtgtttcgatttatctttgattacatggttcaggcctttaggttattctagtgatggaagcaaggttct |
7115825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 301
Target Start/End: Complemental strand, 9274692 - 9274470
Alignment:
| Q |
79 |
tgagagtgttgaaattcatgttgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatat |
178 |
Q |
| |
|
||||||| |||||||| |||||| || ||||| ||| ||||||||||||| | |||||||| || |||| || |||| || |||||||||||||||||| |
|
|
| T |
9274692 |
tgagagttttgaaattaatgttgttgttttggaagggtgtctttgtatgactttgaattatcgaaatactgaatttgaagtttgggtgatgaaagaatat |
9274593 |
T |
|
| Q |
179 |
gattttagggatagttggtgtaaactttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaa |
278 |
Q |
| |
|
| || || |||||||||||||||||||||||| || | || | |||||| | | ||||| || | | |||||| |||||||||||||||||| |
|
|
| T |
9274592 |
ggttctacagatagttggtgtaaactttttactttgatggaaccttgtttccttgtagatttggaaatttttaggcctttatgttattctagtgatggaa |
9274493 |
T |
|
| Q |
279 |
gtaaggttctgttagaaggaatt |
301 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
9274492 |
gtaaggttctgttggaaggaatt |
9274470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 276
Target Start/End: Original strand, 11987384 - 11987655
Alignment:
| Q |
5 |
tttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatga---ggttaattcgaatgagagtgttgaaattcatgttg |
101 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||||| ||||| |||||||||| | || ||| ||||| | | || ||| |||||||| |||||| |
|
|
| T |
11987384 |
tttaacctaacactcgaggttttcaatgaggttccttttcctcatgaaataggaggaggtgaagaggttactaatagtgcaagttttgaaattgatgttg |
11987483 |
T |
|
| Q |
102 |
ctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaa |
201 |
Q |
| |
|
||| ||||||||| ||||||||| ||| ||||||| || | |||||| |||||| | ||||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
11987484 |
ctgttttgggagggtgtctttgtttgactgtgaatcatca---tactaagattgatatttgggtgatgaaagaatatggatgtagagatagttggtgtaa |
11987580 |
T |
|
| Q |
202 |
actttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatgg |
276 |
Q |
| |
|
|||||| || || | ||||||||||| || || ||||||||| | || ||||| |||||||| |||||||| |
|
|
| T |
11987581 |
acttttcacattgatggaatcgtgtttcgttttacctttgaaatctttgagccctttgggttattcgagtgatgg |
11987655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 7115534 - 7115763
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatg---agagtgttgaaattcatgt |
99 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||||||||| |||| | || | ||||| ||| | || ||||| || | | |
|
|
| T |
7115534 |
cgtttaacctaacacttgagcgtttcattgaggttcctcttcctgatgaattaggaggtgaaaaagttaacagtgatggtaatggtattgaactttctat |
7115633 |
T |
|
| Q |
100 |
tgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgt |
199 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||| | ||| || || |||||| |
|
|
| T |
7115634 |
tgctgttttgggagggtgtctttgtatgattgtgaattatagaactactaaaacagatgtttgggtgatgaaacaatatggatctagagacagctggtgt |
7115733 |
T |
|
| Q |
200 |
aaactttttactatggttaaatcgtgtttc |
229 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |
|
|
| T |
7115734 |
aaactttttacattggttaattcgtgtttc |
7115763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 9321209 - 9321164
Alignment:
| Q |
5 |
tttaacctaacacttgaaattttcaatgtggttcctcttcctgatg |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9321209 |
tttaacctaacacttgaaattttcaatgtggttcctcttcctgatg |
9321164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 291
Target Start/End: Original strand, 12018871 - 12019071
Alignment:
| Q |
97 |
tgttgctgctttgggaggctgtctttgtatgattgtgaattatg------aaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggat |
190 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||| |||||||| ||| |||||| || | ||| ||||||||||||||||||| | ||| ||| |
|
|
| T |
12018871 |
tgttgctgatttgggagggtgtctttgtttgattatgaattatcgaaatcaaattactaagataggtgtttgggtgatgaaagaatatggatgtagagat |
12018970 |
T |
|
| Q |
191 |
agttggtgtaaactttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgt |
290 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||| || || ||| | || | || |||||||||||||| |||||||||| |||||| ||| |
|
|
| T |
12018971 |
agttggtgtaaactttttactttgatggaatcgtgtttcgttttaccttttagatttttgagccctttaggttattcgagtgatggaaaaaaggttttgt |
12019070 |
T |
|
| Q |
291 |
t |
291 |
Q |
| |
|
| |
|
|
| T |
12019071 |
t |
12019071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 9274750 - 9274701
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaa |
52 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
9274750 |
cgtttaacctaacacttgatattttcaatgtggttcctcttcctgaagaa |
9274701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 8576392 - 8576451
Alignment:
| Q |
91 |
aattcatgttgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaa |
150 |
Q |
| |
|
|||| ||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8576392 |
aattgatgttgctgtttttggagggtgtctttgtatgagtgtgaattatgaaactactaa |
8576451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 10336076 - 10336024
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaata |
55 |
Q |
| |
|
||||||| ||| ||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
10336076 |
cgtttaatctatcacttgagattttcaatgaggttcctcttcctgatgaaata |
10336024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 7612057 - 7611978
Alignment:
| Q |
132 |
tgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaactttttact |
211 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||||||||||||||||| || | ||||||||||||||| | |||||| |
|
|
| T |
7612057 |
tgaattatgaaactattaagtttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttact |
7611978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 9292164 - 9292113
Alignment:
| Q |
5 |
tttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaatag |
56 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| |||||| |||||||| |
|
|
| T |
9292164 |
tttaacctaacacttgagactttcaatgtggttccttttcctgctgaaatag |
9292113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 16269321 - 16269272
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaa |
52 |
Q |
| |
|
||||||||||||||||||| |||||||| | |||||||||||||| |||| |
|
|
| T |
16269321 |
cgtttaacctaacacttgagattttcaacgaggttcctcttcctgctgaa |
16269272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 10335852 - 10335818
Alignment:
| Q |
254 |
cctttaggttattctagtgatggaagtaaggttct |
288 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10335852 |
cctttaggttattgtagtgatggaagtaaggttct |
10335818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 296
Target Start/End: Original strand, 8579522 - 8579675
Alignment:
| Q |
143 |
actactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaactttttactatggttaaatcgtgtttcacttcacatttga |
242 |
Q |
| |
|
|||||||| |||| || |||||||||||| |||||| ||||| ||||||||||||||| | |||||| | | | ||||| |||| | || ||||| |
|
|
| T |
8579522 |
actactaaggttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttttgaggattcgtgcttcaataaacctttga |
8579621 |
T |
|
| Q |
243 |
aatcgtcgattcctttaggttattctagtgatggaagtaaggttctgttagaag |
296 |
Q |
| |
|
||| | || ||||| |||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
8579622 |
gatctttgaagcctttgtgttattctagtgatagaagtaaagttctgttggaag |
8579675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 96 - 297
Target Start/End: Complemental strand, 37462646 - 37462442
Alignment:
| Q |
96 |
atgttgctgctttgggaggctgtctttgtatgattgtgaattatgaaa---ctactaaaattgatgtgtgggtgatgaaagaatatgattttagggatag |
192 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||| ||| |||||||| ||||||| ||||||||||||||||||| | ||| ||||| |
|
|
| T |
37462646 |
atgttgctgttttgggaggctgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaatatggatctagagatag |
37462547 |
T |
|
| Q |
193 |
ttggtgtaaactttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgtta |
292 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||||||||||||| ||||||||| | || |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
37462546 |
ttggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggcctttatgttattctagtgatggaagtaaggttttgttg |
37462447 |
T |
|
| Q |
293 |
gaagg |
297 |
Q |
| |
|
||||| |
|
|
| T |
37462446 |
gaagg |
37462442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 29467684 - 29467968
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||||||||||||| ||||||| | ||| |||||| ||||||| || ||||| ||||||| |
|
|
| T |
29467684 |
cgtttaacctaaagcttgagattttcaatgaggttcctcttcctga---aataggtta---tgaagttaatgt---tgagagttttaaaattgatgttgc |
29467774 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
| ||||||||| ||||||| |||||||||||||| |||||| |||||||||||| ||| ||||||||||||||| | ||| ||||||||| ||||| |
|
|
| T |
29467775 |
ggttttgggagggtgtctttagttgattgtgaattatcaaactagtaaaattgatgtttggttgatgaaagaatatggatgtagagatagttggcgtaaa |
29467874 |
T |
|
| Q |
203 |
ctttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgttagaag |
296 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||| ||| |||| | || |||||||||||||| || |||||||||| ||||||||| |||| |
|
|
| T |
29467875 |
ctttttactttggttagatcgtgtttcactttacagttggaatctttgaggcctttaggttattcgagcgatggaagtatggttctgtttgaag |
29467968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 3 - 291
Target Start/End: Original strand, 29443225 - 29443504
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
|||||||||||||||| || |||||||||| ||||||| ||||||| |||||||||||||| ||||| | ||||||| || ||||| | || | |
|
|
| T |
29443225 |
cgtttaacctaacactcgagattttcaatgaggttccttttcctga---aataggtgaagatg---ttaat---agtgagagttttcaaattggtatttc |
29443315 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
| | ||| ||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| | ||| ||||| ||||||||| |
|
|
| T |
29443316 |
ggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaa |
29443415 |
T |
|
| Q |
203 |
ctttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgtt |
291 |
Q |
| |
|
||||||||| ||| | |||||||||||| || || ||||| | | | || |||||||||||| || ||| |||||| ||||||||| |
|
|
| T |
29443416 |
ctttttactttggctgaatcgtgtttcagtttacctttgagagctttgaggattttaggttattcgagcgatagaagtatggttctgtt |
29443504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 29453208 - 29453492
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
||||||||||||||| || |||||||||| ||||||| ||||||| |||||||||||| | | ||| | ||||||| |||||||| |||||| |
|
|
| T |
29453208 |
cgtttaacctaacacacgagattttcaatgaggttccttttcctga---aataggtgaagaagtg---aat---agtgagagttttgaaattggtgttgc |
29453298 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
| ||||| ||| |||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| | ||| ||||| |||||| || |
|
|
| T |
29453299 |
ggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtgaa |
29453398 |
T |
|
| Q |
203 |
ctttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgttagaag |
296 |
Q |
| |
|
||||||||| ||| |||| ||||||| || || ||||||| | | | ||||||| |||||| || |||||||||| ||||||||| |||| |
|
|
| T |
29453399 |
ctttttactttggcggaatcatgtttcattttacctttgaaaactttgtggcctttagcttattcgagcgatggaagtatggttctgttggaag |
29453492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 291
Target Start/End: Complemental strand, 29423503 - 29423224
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgc |
102 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||||| ||||||| ||| |||||||| | | ||| | ||||||| |||||||| |||||| |
|
|
| T |
29423503 |
cgtttaacctaacacatgagattttcaatgaggttccttttcctga---aattggtgaagaagtg---aat---agtgagagttttgaaattggtgttgc |
29423413 |
T |
|
| Q |
103 |
tgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaa |
202 |
Q |
| |
|
| | ||| ||| || |||||||||| |||||||||| ||||| |||||||||||| ||| ||||||||||||||| | ||| ||||| ||||||||| |
|
|
| T |
29423412 |
ggttctggaagggtgcctttgtatgactgtgaattatcaaactgttaaaattgatgtttggctgatgaaagaatatggatgtagagatagctggtgtaaa |
29423313 |
T |
|
| Q |
203 |
ctttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgtt |
291 |
Q |
| |
|
||||||||| ||| ||||||||||||| | || ||||||| | | || | ||||| |||||| || |||||| ||| ||||||||| |
|
|
| T |
29423312 |
ctttttactttggcagaatcgtgtttcaccttacctttgaaagctttgaggcttttagcttattcgagcgatggaggtatggttctgtt |
29423224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 106 - 291
Target Start/End: Complemental strand, 45243843 - 45243658
Alignment:
| Q |
106 |
tttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaactt |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||||||||| || ||| |||| ||||||||||||| |
|
|
| T |
45243843 |
tttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaactt |
45243744 |
T |
|
| Q |
206 |
tttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgtt |
291 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||| |||| | || |||||| ||||||| |||||| ||||||| |||||||| |
|
|
| T |
45243743 |
tttactttggttaaatcgtgtttcaattttcatttggaatctttgaggcctttatgttattcgagtgatcgaagtaaagttctgtt |
45243658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 45230569 - 45230452
Alignment:
| Q |
116 |
tgtctttgtatgattgtgaattatgaaactactaaaattgatg---tgtgggtgatgaaagaatatgattttagggatagttggtgtaaactttttacta |
212 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||| | ||||||||||||||||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
45230569 |
tgtctttgtatgattgtgaattatcaaactaataaaattgatgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactt |
45230470 |
T |
|
| Q |
213 |
tggttaaatcgtgtttca |
230 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
45230469 |
tggttaaatcgtggttca |
45230452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 291
Target Start/End: Complemental strand, 45238059 - 45237909
Alignment:
| Q |
141 |
aaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaactttttactatggttaaatcgtgtttcacttcacattt |
240 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||||| | ||| |||||||||||| || ||| | |
|
|
| T |
45238059 |
aaactactcaaattgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttcaattttcatct |
45237960 |
T |
|
| Q |
241 |
gaaatcgtcgattcctttaggttattctagtgatggaagtaaggttctgtt |
291 |
Q |
| |
|
||||| || || |||||| ||||||| || ||| ||||||| |||||||| |
|
|
| T |
45237959 |
gaaattgttgaggcctttatgttattcaagcgatcgaagtaaagttctgtt |
45237909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 26575100 - 26574882
Alignment:
| Q |
5 |
tttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggtgaagatgaggttaattcgaatgagagtgttgaaattcatgttgctg |
104 |
Q |
| |
|
|||||||| ||||||| | |||||| | |||||||||||||||||||||||| ||| | | ||||| | | ||||| || |||||| |||||||| |
|
|
| T |
26575100 |
tttaacctttcacttgagactttcaacgaggttcctcttcctgatgaaataggggaacaag---ttaat---agtaagagttttaaaattcgtgttgctg |
26575007 |
T |
|
| Q |
105 |
ctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaact |
204 |
Q |
| |
|
||| ||||| ||||||||||||| |||| ||||| || ||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
26575006 |
atttaggagggtgtctttgtatgactgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaact |
26574907 |
T |
|
| Q |
205 |
ttttactatggttaaatcgtgtttc |
229 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
26574906 |
ttttactgtggttaaatcgtgtttc |
26574882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 561340 - 561273
Alignment:
| Q |
132 |
tgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgt |
199 |
Q |
| |
|
||||| || |||||||||| ||||||| ||||| ||||||||||||| ||||| |||||||||||| |
|
|
| T |
561340 |
tgaataataaaactactaaggttgatgtttgggtaatgaaagaatatggatttagagatagttggtgt |
561273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 301
Target Start/End: Original strand, 41966684 - 41966898
Alignment:
| Q |
87 |
ttgaaattcatgttgctgctttgggaggctgtctttgtatgattgtgaattatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttag |
186 |
Q |
| |
|
|||||||| |||| ||| ||||||||| |||||||||||| ||||| ||||| |||||| | ||||||| |||||||||||||||||| | ||| |
|
|
| T |
41966684 |
ttgaaatttctgtttctgttttgggagggtgtctttgtatggttgtggattatcaaactagcgatgttgatgtttgggtgatgaaagaatatcgatctag |
41966783 |
T |
|
| Q |
187 |
ggatagttggtgtaaactttttactatggttaaatcgtgtttcacttcacatttgaaatcgtcgattcctttaggttattctagtgatggaagtaaggtt |
286 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| |||||||||||| ||||||||| | | |||||||| |||||| |||||||| |||||| |
|
|
| T |
41966784 |
agatagctggtgtaaactttttactttggttaaatcttgtttcacttcatctttgaaatccttgggggttttaggttgttctagcgatggaaggaaggtt |
41966883 |
T |
|
| Q |
287 |
ctgttagaaggaatt |
301 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
41966884 |
ctgttgcaaggaatt |
41966898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 41966618 - 41966673
Alignment:
| Q |
3 |
cgtttaacctaacacttgaaattttcaatgtggttcctcttcctgatgaaataggt |
58 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
41966618 |
cgtttaacctaacacttgagattttcaaccaggttcctcttcctgctgaaataggt |
41966673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 36224532 - 36224457
Alignment:
| Q |
136 |
ttatgaaactactaaaattgatgtgtgggtgatgaaagaatatgattttagggatagttggtgtaaactttttact |
211 |
Q |
| |
|
||||| ||||| |||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||| | |||||| |
|
|
| T |
36224532 |
ttatggaactaataaatttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttact |
36224457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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