View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20406_low_8 (Length: 318)
Name: NF20406_low_8
Description: NF20406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20406_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 28914335 - 28914043
Alignment:
| Q |
1 |
ttctctgccccagattggtgtgaatgttctacacatgaaaatggctaggataataagtgtattaaagatattgtttaaggaatctatnnnnnnnntcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
28914335 |
ttctctgccccagattggtgtgaatgttctacacatgaaagtggctaggataataagtgtattaaagatattgtttaaggaatcaataaaaaaaatcttt |
28914236 |
T |
|
| Q |
101 |
aaaatataagttacacacgtataaaaacatgatcgaccatgtgaaagtacaatcaacgtatctatttcttctcctctcaggcggacaaaatagaaaggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28914235 |
aaaatataagttacacacgtataaaaacatgatcgaccatgtgaaagtacaatcaacgtatctatttcttctcatctcaggcggacaaaatagaaaggaa |
28914136 |
T |
|
| Q |
201 |
aacgacaaaaaattccctcgcttcatccctctcctctatgcaattcactcctctgaccctctccctcccactcaactagttcccgcaacaccg |
293 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28914135 |
aacgacaaaaaattccctctcttcatccctctcctctatgcaattcactcctctgaccctctccctcccactcaactagttcccgcaacaccg |
28914043 |
T |
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