View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20407_high_1 (Length: 376)
Name: NF20407_high_1
Description: NF20407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20407_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 136 - 359
Target Start/End: Complemental strand, 4717235 - 4717016
Alignment:
| Q |
136 |
tattattttgtttcttaattatgcttttgttattgattgatagtagcttccaatccgtatacccggttaaactttgttcataagcacttgaattttccac |
235 |
Q |
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| T |
4717235 |
tattattttgtttcttaattatgcttttgttattgattgatagtagcttcgaatccgtatacccggtgaaactttgttcataagcacttgaattttccac |
4717136 |
T |
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| Q |
236 |
acccatagaccatgcatataaacacacggaaagtgatcacatcaaactgtttgaaacatttaaattttccaactttgattccaaccaaccaaatgagacg |
335 |
Q |
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| T |
4717135 |
acccatagaccatgcatataaacacacggaaagtgatcacatcaaactgtttgaaacatttgaattttccaactttgattccaa----ccaaatgagacg |
4717040 |
T |
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| Q |
336 |
caaatcaatttactaaacacacat |
359 |
Q |
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| T |
4717039 |
caaatcaatttactaaacacacat |
4717016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 101 - 355
Target Start/End: Complemental strand, 4741297 - 4741051
Alignment:
| Q |
101 |
atatctttgccatttgtgaataaattaaagaca--aatattattttgtttcttaattatgcttttgttattgattgatagtagcttccaatccgtatacc |
198 |
Q |
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| T |
4741297 |
atatcattgcgatttgtgaataaattaaagacacaaatattattttgtttcttaaaaatgcttttgttattgattgatagtagcttcca-----tataga |
4741203 |
T |
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| Q |
199 |
cggttaaactttgttcataagcacttgaattttccacacccatagaccatgcatataaacacacggaaagtgatcacatcaaactgtttgaaacatttaa |
298 |
Q |
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| T |
4741202 |
cagtgaaact--gttcataatcacttgaattttccacacccatagaccatgcatataaacacactgaaagtgatcacatcaaactgtttgaaacatttga |
4741105 |
T |
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| Q |
299 |
attttccaactttgattccaaccaaccaaatgagacgcaaatcaatttactaaacac |
355 |
Q |
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| T |
4741104 |
attttcgaactttgattcca---tacaaaatgagacgcaaatcaatttactaaacac |
4741051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 54 - 249
Target Start/End: Complemental strand, 4742375 - 4742177
Alignment:
| Q |
54 |
tttaaaaattcattaaaacttcttgaatctacaacaaaagtaattgtatatctttgccatttgtgaataaattaaagaca--aatattattttgtttctt |
151 |
Q |
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| T |
4742375 |
tttaaaaaattattaaaatttcctgaatctacaacaaaagtgattgtctatctttgtgatttgtgaataaattaaagacagaaatattattttgtttctt |
4742276 |
T |
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| Q |
152 |
aattatgcttttgttattgattgatagtagcttccaatcc--gtatacccggttaaactttgttcataagcacttgaattttccacacccatagaccatg |
249 |
Q |
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| T |
4742275 |
aattatgcttttcttattgattgatagtagcttccaatccatatatacccggtgaaac-ttgttcgtaagcacttgaattttccacacccatagaccatg |
4742177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 4717315 - 4717255
Alignment:
| Q |
9 |
tatttttaaatgaacaggaaatttaattattttaacgcgctgctatttaaaaattcattaa |
69 |
Q |
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| T |
4717315 |
tatttttaaatgaacagggaattcaattattttaacgcgctgctatttaaaaatttattaa |
4717255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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