View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20407_high_3 (Length: 285)
Name: NF20407_high_3
Description: NF20407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20407_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 29208254 - 29208009
Alignment:
| Q |
19 |
atagcgttatagcaccactatttaacaacgctattttacaatgttgttagacaaagagaagtcattgaagatgattctcatgcacttgttttgttctatt |
118 |
Q |
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| T |
29208254 |
atagcgttatagcaccactatttaacaacgctattttacaatgttgttggacaaagagaagtcaataaagatgattctcatgcacttgttttgttctatt |
29208155 |
T |
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| Q |
119 |
tcatggttcatcttaagattgaagttatggaattgtcaaaagtagcatccttaatgatagtaaatgaaatgagatgaatgggaggtgtttcttaagcaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208154 |
tcatggttcatcttaagattgaagttatggaattgtcaaaagtagcatccttaatgatagtaaatgaaatgagatgaatgggaggtgtttcttaagcaac |
29208055 |
T |
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| Q |
219 |
aaaacagcttgcatacttca----ctagatagtgatacaacctttg |
260 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
29208054 |
aaaacatcttgcatacttcactagctagatagtgatacaacctttg |
29208009 |
T |
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